GFF Utilities: GffRead and GffCompare
GFF Utilities: GffRead and GffCompare
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Language
English
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Scope and Contents
Contents
GTF (Gene Transfer Format) and GFF (General Feature Format) are popular file formats used by bioinformatics programs to represent and exchange information about various genomic features, such as gene and transcript locations and structure. GffRead and GffCompare are open source programs that provide extensive and efficient solutions to manipulate files in a GTF or GFF format. While GffRead can convert, sort, filter, transform, or cluster genomic features, GffCompare can be used to compare and merge different gene annotations.
Availability and implementation:
GFF utilities are implemented in C++ for Linux and OS X and released as open source under an MIT license (
https://github.com/gpertea/gffread
,
https://github.com/gpertea/gffcompare
)....
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Full title
GFF Utilities: GffRead and GffCompare
Authors, Artists and Contributors
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TN_cdi_crossref_primary_10_12688_f1000research_23297_1
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_crossref_primary_10_12688_f1000research_23297_1
Other Identifiers
ISSN
2046-1402
E-ISSN
2046-1402
DOI
10.12688/f1000research.23297.1
