Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial com...
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
About this item
Full title
Author / Creator
Bickhart, Derek M. , Watson, Mick , Koren, Sergey , Panke-Buisse, Kevin , Cersosimo, Laura M. , Press, Maximilian O. , Van Tassell, Curtis P. , Van Kessel, Jo Ann S. , Haley, Bradd J. , Kim, Seon Woo , Heiner, Cheryl , Suen, Garret , Bakshy, Kiranmayee , Liachko, Ivan , Sullivan, Shawn T. , Myer, Phillip R. , Ghurye, Jay , Pop, Mihai , Weimer, Paul J. , Phillippy, Adam M. and Smith, Timothy P. L.
Publisher
England: BioMed Central Ltd
Journal title
Language
English
Formats
Publication information
Publisher
England: BioMed Central Ltd
Subjects
More information
Scope and Contents
Contents
We describe a method that adds long-read sequencing to a mix of technologies used to assemble a highly complex cattle rumen microbial community, and provide a comparison to short read-based methods. Long-read alignments and Hi-C linkage between contigs support the identification of 188 novel virus-host associations and the determination of phage li...
Alternative Titles
Full title
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
Authors, Artists and Contributors
Author / Creator
Watson, Mick
Koren, Sergey
Panke-Buisse, Kevin
Cersosimo, Laura M.
Press, Maximilian O.
Van Tassell, Curtis P.
Van Kessel, Jo Ann S.
Haley, Bradd J.
Kim, Seon Woo
Heiner, Cheryl
Suen, Garret
Bakshy, Kiranmayee
Liachko, Ivan
Sullivan, Shawn T.
Myer, Phillip R.
Ghurye, Jay
Pop, Mihai
Weimer, Paul J.
Phillippy, Adam M.
Smith, Timothy P. L.
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_doaj_primary_oai_doaj_org_article_0289d63992644985819f814ba8e97120
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_0289d63992644985819f814ba8e97120
Other Identifiers
ISSN
1474-760X,1474-7596
E-ISSN
1474-760X
DOI
10.1186/s13059-019-1760-x
