Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
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Publisher
England: BioMed Central
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Language
English
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Publisher
England: BioMed Central
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Contents
We introduce alevin, a fast end-to-end pipeline to process droplet-based single-cell RNA sequencing data, performing cell barcode detection, read mapping, unique molecular identifier (UMI) deduplication, gene count estimation, and cell barcode whitelisting. Alevin's approach to UMI deduplication considers transcript-level constraints on the molecul...
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Full title
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
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TN_cdi_doaj_primary_oai_doaj_org_article_0fd3e361ed254020a5219a3e4163d9e4
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_0fd3e361ed254020a5219a3e4163d9e4
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ISSN
1474-760X,1474-7596
E-ISSN
1474-760X
DOI
10.1186/s13059-019-1670-y
