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LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat vari...

LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat vari...

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_10f83745c1f7435fb5ac3dd6aa04ee9f

LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants

About this item

Full title

LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants

Author / Creator

Lu, Jinfeng , Toro, Camilo , Adams, David R. , Acosta, Maria T. , Adam, Margaret , Alvarez, Raquel L. , Alvey, Justin , Amendola, Laura , Andrews, Ashley , Ashley, Euan A. , Bacino, Carlos A. , Bademci, Guney , Balasubramanyam, Ashok , Baldridge, Dustin , Bale, Jim , Bamshad, Michael , Barbouth, Deborah , Bayrak-Toydemir, Pinar , Beck, Anita , Beggs, Alan H. , Behrens, Edward , Bejerano, Gill , Bellen, Hugo J. , Bennett, Jimmy , Berg-Rood, Beverly , Bernstein, Jonathan A. , Berry, Gerard T. , Bican, Anna , Bivona, Stephanie , Blue, Elizabeth , Bohnsack, John , Bonner, Devon , Botto, Lorenzo , Boyd, Brenna , Briere, Lauren C. , Brown, Gabrielle , Burke, Elizabeth A. , Burrage, Lindsay C. , Butte, Manish J. , Byers, Peter , Byrd, William E. , Carey, John , Carrasquillo, Olveen , Cassini, Thomas , Chang, Ta Chen Peter , Chanprasert, Sirisak , Chao, Hsiao-Tuan , Chinn, Ivan , Clark, Gary D. , Coakley, Terra R. , Cobban, Laurel A. , Cogan, Joy D. , Coggins, Matthew , Cole, F. Sessions , Colley, Heather A. , Cope, Heidi , Corona, Rosario , Craigen, William J. , Crouse, Andrew B. , Cunningham, Michael , D’Souza, Precilla , Dai, Hongzheng , Dasari, Surendra , Davis, Joie , Dayal, Jyoti G. , Dell’Angelica, Esteban C. , Dickson, Patricia , Dipple, Katrina , Doherty, Daniel , Dorrani, Naghmeh , Doss, Argenia L. , Douine, Emilie D. , Earl, Dawn , Eckstein, David J. , Emrick, Lisa T. , Eng, Christine M. , Falk, Marni , Fieg, Elizabeth L. , Fisher, Paul G. , Fogel, Brent L. , Forghani, Irman , Gahl, William A. , Glass, Ian , Gochuico, Bernadette , Goddard, Page C. , Godfrey, Rena A. , Golden-Grant, Katie , Grajewski, Alana , Hadley, Don , Hahn, Sihoun , Halley, Meghan C. , Hamid, Rizwan , Hassey, Kelly , Hayes, Nichole , High, Frances , Hing, Anne , Hisama, Fuki M. , Holm, Ingrid A. , Hom, Jason , Horike-Pyne, Martha and Undiagnosed Diseases Network

Publisher

England: BioMed Central Ltd

Journal title

BMC genomics, 2024-01, Vol.25 (1), p.115-22, Article 115

Language

English

Formats

Publication information

Publisher

England: BioMed Central Ltd

More information

Scope and Contents

Contents

Short tandem repeats (STRs) are widely distributed across the human genome and are associated with numerous neurological disorders. However, the extent that STRs contribute to disease is likely under-estimated because of the challenges calling these variants in short read next generation sequencing data. Several computational tools have been develo...

Alternative Titles

Full title

LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants

Authors, Artists and Contributors

Author / Creator

Lu, Jinfeng
Toro, Camilo
Adams, David R.
Acosta, Maria T.
Adam, Margaret
Alvarez, Raquel L.
Alvey, Justin
Amendola, Laura
Andrews, Ashley
Ashley, Euan A.
Bacino, Carlos A.
Bademci, Guney
Balasubramanyam, Ashok
Baldridge, Dustin
Bale, Jim
Bamshad, Michael
Barbouth, Deborah
Bayrak-Toydemir, Pinar
Beck, Anita
Beggs, Alan H.
Behrens, Edward
Bejerano, Gill
Bellen, Hugo J.
Bennett, Jimmy
Berg-Rood, Beverly
Bernstein, Jonathan A.
Berry, Gerard T.
Bican, Anna
Bivona, Stephanie
Blue, Elizabeth
Bohnsack, John
Bonner, Devon
Botto, Lorenzo
Boyd, Brenna
Briere, Lauren C.
Brown, Gabrielle
Burke, Elizabeth A.
Burrage, Lindsay C.
Butte, Manish J.
Byers, Peter
Byrd, William E.
Carey, John
Carrasquillo, Olveen
Cassini, Thomas
Chang, Ta Chen Peter
Chanprasert, Sirisak
Chao, Hsiao-Tuan
Chinn, Ivan
Clark, Gary D.
Coakley, Terra R.
Cobban, Laurel A.
Cogan, Joy D.
Coggins, Matthew
Cole, F. Sessions
Colley, Heather A.
Cope, Heidi
Corona, Rosario
Craigen, William J.
Crouse, Andrew B.
Cunningham, Michael
D’Souza, Precilla
Dai, Hongzheng
Dasari, Surendra
Davis, Joie
Dayal, Jyoti G.
Dell’Angelica, Esteban C.
Dickson, Patricia
Dipple, Katrina
Doherty, Daniel
Dorrani, Naghmeh
Doss, Argenia L.
Douine, Emilie D.
Earl, Dawn
Eckstein, David J.
Emrick, Lisa T.
Eng, Christine M.
Falk, Marni
Fieg, Elizabeth L.
Fisher, Paul G.
Fogel, Brent L.
Forghani, Irman
Gahl, William A.
Glass, Ian
Gochuico, Bernadette
Goddard, Page C.
Godfrey, Rena A.
Golden-Grant, Katie
Grajewski, Alana
Hadley, Don
Hahn, Sihoun
Halley, Meghan C.
Hamid, Rizwan
Hassey, Kelly
Hayes, Nichole
High, Frances
Hing, Anne
Hisama, Fuki M.
Holm, Ingrid A.
Hom, Jason
Horike-Pyne, Martha
Undiagnosed Diseases Network

Identifiers

Primary Identifiers

Record Identifier

TN_cdi_doaj_primary_oai_doaj_org_article_10f83745c1f7435fb5ac3dd6aa04ee9f

Permalink

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_10f83745c1f7435fb5ac3dd6aa04ee9f

Other Identifiers

ISSN

1471-2164

E-ISSN

1471-2164

DOI

10.1186/s12864-023-09935-9

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