Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases
About this item
Full title
Author / Creator
Armstrong, George , Martino, Cameron , Morris, Justin , Khaleghi, Behnam , Kang, Jaeyoung , DeReus, Jeff , Zhu, Qiyun , Roush, Daniel , McDonald, Daniel , Gonazlez, Antonio , Shaffer, Justin P. , Carpenter, Carolina , Estaki, Mehrbod , Wandro, Stephen , Eilert, Sean , Akel, Ameen , Eno, Justin , Curewitz, Ken , Swafford, Austin D. , Moshiri, Niema , Rosing, Tajana and Knight, Rob
Publisher
United States: American Society for Microbiology
Journal title
Language
English
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Publication information
Publisher
United States: American Society for Microbiology
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More information
Scope and Contents
Contents
In shotgun metagenomics studies that seek to relate changes in microbial DNA across samples, processing the data on a computer often takes longer than obtaining the data from the sequencing instrument. Recently developed software packages that perform individual steps in the pipeline of data processing in principle offer speed advantages, but in pr...
Alternative Titles
Full title
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases
Authors, Artists and Contributors
Author / Creator
Martino, Cameron
Morris, Justin
Khaleghi, Behnam
Kang, Jaeyoung
DeReus, Jeff
Zhu, Qiyun
Roush, Daniel
McDonald, Daniel
Gonazlez, Antonio
Shaffer, Justin P.
Carpenter, Carolina
Estaki, Mehrbod
Wandro, Stephen
Eilert, Sean
Akel, Ameen
Eno, Justin
Curewitz, Ken
Swafford, Austin D.
Moshiri, Niema
Rosing, Tajana
Knight, Rob
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_doaj_primary_oai_doaj_org_article_130f6ba4e22240738abb123644a395e2
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_130f6ba4e22240738abb123644a395e2
Other Identifiers
ISSN
2379-5077
E-ISSN
2379-5077
DOI
10.1128/msystems.01378-21
