TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
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Author / Creator
Monat, Cécile , Padmarasu, Sudharsan , Lux, Thomas , Wicker, Thomas , Gundlach, Heidrun , Himmelbach, Axel , Ens, Jennifer , Li, Chengdao , Muehlbauer, Gary J. , Schulman, Alan H. , Waugh, Robbie , Braumann, Ilka , Pozniak, Curtis , Scholz, Uwe , Mayer, Klaus F. X. , Spannagl, Manuel , Stein, Nils and Mascher, Martin
Publisher
England: BioMed Central Ltd
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English
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Publisher
England: BioMed Central Ltd
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Contents
Chromosome-scale genome sequence assemblies underpin pan-genomic studies. Recent genome assembly efforts in the large-genome Triticeae crops wheat and barley have relied on the commercial closed-source assembly algorithm DeNovoMagic. We present TRITEX, an open-source computational workflow that combines paired-end, mate-pair, 10X Genomics linked-re...
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TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
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TN_cdi_doaj_primary_oai_doaj_org_article_1f11fd7d8e04455291871983de0b2303
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_1f11fd7d8e04455291871983de0b2303
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ISSN
1474-760X,1474-7596
E-ISSN
1474-760X
DOI
10.1186/s13059-019-1899-5
