Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort...
Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests
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Author / Creator
Haegeman, Annelies , Foucart, Yoika , De Jonghe, Kris , Goedefroit, Thomas , Al Rwahnih, Maher , Boonham, Neil , Candresse, Thierry , Gaafar, Yahya Z A , Hurtado-Gonzales, Oscar P , Kogej Zwitter, Zala , Kutnjak, Denis , Lamovšek, Janja , Lefebvre, Marie , Malapi, Martha , Mavrič Pleško, Irena , Önder, Serkan , Reynard, Jean-Sébastien , Salavert Pamblanco, Ferran , Schumpp, Olivier , Stevens, Kristian , Pal, Chandan , Tamisier, Lucie , Ulubaş Serçe, Çiğdem , van Duivenbode, Inge , Waite, David W , Hu, Xiaojun , Ziebell, Heiko and Massart, Sébastien
Publisher
Switzerland: MDPI AG
Journal title
Language
English
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Publication information
Publisher
Switzerland: MDPI AG
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More information
Scope and Contents
Contents
High-throughput sequencing (HTS), more specifically RNA sequencing of plant tissues, has become an indispensable tool for plant virologists to detect and identify plant viruses. During the data analysis step, plant virologists typically compare the obtained sequences to reference virus databases. In this way, they are neglecting sequences without h...
Alternative Titles
Full title
Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests
Authors, Artists and Contributors
Author / Creator
Foucart, Yoika
De Jonghe, Kris
Goedefroit, Thomas
Al Rwahnih, Maher
Boonham, Neil
Candresse, Thierry
Gaafar, Yahya Z A
Hurtado-Gonzales, Oscar P
Kogej Zwitter, Zala
Kutnjak, Denis
Lamovšek, Janja
Lefebvre, Marie
Malapi, Martha
Mavrič Pleško, Irena
Önder, Serkan
Reynard, Jean-Sébastien
Salavert Pamblanco, Ferran
Schumpp, Olivier
Stevens, Kristian
Pal, Chandan
Tamisier, Lucie
Ulubaş Serçe, Çiğdem
van Duivenbode, Inge
Waite, David W
Hu, Xiaojun
Ziebell, Heiko
Massart, Sébastien
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_doaj_primary_oai_doaj_org_article_40030533daaa4723a56319bd0debfd81
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_40030533daaa4723a56319bd0debfd81
Other Identifiers
ISSN
2223-7747
E-ISSN
2223-7747
DOI
10.3390/plants12112139
