TransLiG: a de novo transcriptome assembler that uses line graph iteration
TransLiG: a de novo transcriptome assembler that uses line graph iteration
About this item
Full title
Author / Creator
Liu, Juntao , Yu, Ting , Mu, Zengchao and Li, Guojun
Publisher
England: BioMed Central Ltd
Journal title
Language
English
Formats
Publication information
Publisher
England: BioMed Central Ltd
Subjects
More information
Scope and Contents
Contents
We present TransLiG, a new de novo transcriptome assembler, which is able to integrate the sequence depth and pair-end information into the assembling procedure by phasing paths and iteratively constructing line graphs starting from splicing graphs. TransLiG is shown to be significantly superior to all the salient de novo assemblers in both accuracy and computing resources when tested on artificial and real RNA-seq data. TransLiG is freely available at https://sourceforge.net/projects/transcriptomeassembly/files/ ....
Alternative Titles
Full title
TransLiG: a de novo transcriptome assembler that uses line graph iteration
Authors, Artists and Contributors
Author / Creator
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Record Identifier
TN_cdi_doaj_primary_oai_doaj_org_article_8a4034fd096943eb9d42c5d581533a9b
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_8a4034fd096943eb9d42c5d581533a9b
Other Identifiers
ISSN
1474-760X,1474-7596
E-ISSN
1474-760X
DOI
10.1186/s13059-019-1690-7
