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A benchmark study of compression software for human short-read sequence data

A benchmark study of compression software for human short-read sequence data

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_a79cd930e56045d290bf0e7c2b7c172d

A benchmark study of compression software for human short-read sequence data

About this item

Full title

A benchmark study of compression software for human short-read sequence data

Publisher

London: Nature Publishing Group UK

Journal title

Scientific reports, 2025-05, Vol.15 (1), p.15358-7, Article 15358

Language

English

Formats

Publication information

Publisher

London: Nature Publishing Group UK

More information

Scope and Contents

Contents

Efficient data compression technologies are crucial to reduce the cost of long-term storage and file transfer in whole genome sequencing studies. This study benchmarked four specialized compression tools developed for paired-end fastq.gz files DRAGEN ORA 4.3.4 (ORA), Genozip 15.0.62, repaq 0.3.0, and SPRING 1.1.1 using three subjects from the genom...

Alternative Titles

Full title

A benchmark study of compression software for human short-read sequence data

Identifiers

Primary Identifiers

Record Identifier

TN_cdi_doaj_primary_oai_doaj_org_article_a79cd930e56045d290bf0e7c2b7c172d

Permalink

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_a79cd930e56045d290bf0e7c2b7c172d

Other Identifiers

ISSN

2045-2322

E-ISSN

2045-2322

DOI

10.1038/s41598-025-00491-8

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