FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation captur...
FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data
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England: BioMed Central Ltd
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English
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England: BioMed Central Ltd
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Chromosome conformation capture data, particularly from high-throughput approaches such as Hi-C, are typically very complex to analyse. Existing analysis tools are often single-purpose, or limited in compatibility to a small number of data formats, frequently making Hi-C analyses tedious and time-consuming. Here, we present FAN-C, an easy-to-use command-line tool and powerful Python API with a broad feature set covering matrix generation, analysis, and visualisation for C-like data ( https://github.com/vaquerizaslab/fanc ). Due to its compatibility with the most prevalent Hi-C storage formats, FAN-C can be used in combination with a large number of existing analysis tools, thus greatly simplifying Hi-C matrix analysis....
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FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data
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TN_cdi_doaj_primary_oai_doaj_org_article_aa7f65e045db4daea184045b6c38d1dd
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https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_aa7f65e045db4daea184045b6c38d1dd
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ISSN
1474-760X,1474-7596
E-ISSN
1474-760X
DOI
10.1186/s13059-020-02215-9
