Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks
Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks
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Publisher
United States: PeerJ. Ltd
Journal title
Language
English
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Publisher
United States: PeerJ. Ltd
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Scope and Contents
Contents
Whole genome sequencing (WGS) has gained increasing importance in responses to enteric bacterial outbreaks. Common analysis procedures for WGS, single nucleotide polymorphisms (SNPs) and genome assembly, are highly dependent upon WGS data quality.
Raw, unprocessed WGS reads from
,
, and
outbreak clusters were characterized for four qual...
Alternative Titles
Full title
Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks
Authors, Artists and Contributors
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TN_cdi_doaj_primary_oai_doaj_org_article_ca440bb680684ba09abb720b0731d66d
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_ca440bb680684ba09abb720b0731d66d
Other Identifiers
ISSN
2167-8359
E-ISSN
2167-8359
DOI
10.7717/peerj.12446
