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RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery

RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_ce25faef136a41aa9e3347852a036493

RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery

About this item

Full title

RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery

Publisher

Washington: American Society for Microbiology

Journal title

mSystems, 2020-09, Vol.5 (5)

Language

English

Formats

Publication information

Publisher

Washington: American Society for Microbiology

More information

Scope and Contents

Contents

Bioinformatics-powered discovery of novel ribosomal natural products (RiPPs) has historically been hindered by the lack of a common genetic feature across RiPP classes. Herein, we introduce RRE-Finder, a method for identifying RRE domains, which are present in a majority of prokaryotic RiPP biosynthetic gene clusters (BGCs). RRE-Finder identifies R...

Alternative Titles

Full title

RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery

Identifiers

Primary Identifiers

Record Identifier

TN_cdi_doaj_primary_oai_doaj_org_article_ce25faef136a41aa9e3347852a036493

Permalink

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_ce25faef136a41aa9e3347852a036493

Other Identifiers

ISSN

2379-5077

E-ISSN

2379-5077

DOI

10.1128/mSystems.00267-20

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