Recommendations for performance optimizations when using GATK3.8 and GATK4
Recommendations for performance optimizations when using GATK3.8 and GATK4
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Publisher
England: BioMed Central Ltd
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Language
English
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Publisher
England: BioMed Central Ltd
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Contents
Use of the Genome Analysis Toolkit (GATK) continues to be the standard practice in genomic variant calling in both research and the clinic. Recently the toolkit has been rapidly evolving. Significant computational performance improvements have been introduced in GATK3.8 through collaboration with Intel in 2017. The first release of GATK4 in early 2...
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Full title
Recommendations for performance optimizations when using GATK3.8 and GATK4
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TN_cdi_doaj_primary_oai_doaj_org_article_d1ba367575504c22a9097a3dd969475e
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https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_d1ba367575504c22a9097a3dd969475e
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ISSN
1471-2105
E-ISSN
1471-2105
DOI
10.1186/s12859-019-3169-7
