snPATHO-seq, a versatile FFPE single-nucleus RNA sequencing method to unlock pathology archives
snPATHO-seq, a versatile FFPE single-nucleus RNA sequencing method to unlock pathology archives
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Author / Creator
Wang, Taopeng , Roach, Michael J. , Harvey, Kate , Morlanes, Javier Escudero , Kiedik, Beata , Al-Eryani, Ghamdan , Greenwald, Alissa , Kalavros, Nikolaos , Dezem, Felipe Segato , Ma, Yuling , Pita-Juarez, Yered H. , Wise, Kellie , Degletagne, Cyril , Elz, Anna , Hadadianpour, Azi , Johanneson, Jack , Pakiam, Fiona , Ryu, Heeju , Newell, Evan W. , Tonon, Laurie , Kohlway, Andrew , Drennon, Tingsheng , Abousoud, Jawad , Stott, Ryan , Lund, Paul , Durruthy, Jens , Vallejo, Andres F. , Li, Wenyan , Salomon, Robert , Kaczorowski, Dominik , Warren, Joanna , Butler, Lisa M. , O’Toole, Sandra , Plummer, Jasmine , Vlachos, Ioannis S. , Lundeberg, Joakim , Swarbrick, Alexander and Martelotto, Luciano G.
Publisher
London: Nature Publishing Group UK
Journal title
Language
English
Formats
Publication information
Publisher
London: Nature Publishing Group UK
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More information
Scope and Contents
Contents
Formalin-fixed paraffin-embedded (FFPE) samples are valuable but underutilized in single-cell omics research due to their low RNA quality. In this study, leveraging a recent advance in single-cell genomic technology, we introduce snPATHO-seq, a versatile method to derive high-quality single-nucleus transcriptomic data from FFPE samples. We benchmar...
Alternative Titles
Full title
snPATHO-seq, a versatile FFPE single-nucleus RNA sequencing method to unlock pathology archives
Authors, Artists and Contributors
Author / Creator
Roach, Michael J.
Harvey, Kate
Morlanes, Javier Escudero
Kiedik, Beata
Al-Eryani, Ghamdan
Greenwald, Alissa
Kalavros, Nikolaos
Dezem, Felipe Segato
Ma, Yuling
Pita-Juarez, Yered H.
Wise, Kellie
Degletagne, Cyril
Elz, Anna
Hadadianpour, Azi
Johanneson, Jack
Pakiam, Fiona
Ryu, Heeju
Newell, Evan W.
Tonon, Laurie
Kohlway, Andrew
Drennon, Tingsheng
Abousoud, Jawad
Stott, Ryan
Lund, Paul
Durruthy, Jens
Vallejo, Andres F.
Li, Wenyan
Salomon, Robert
Kaczorowski, Dominik
Warren, Joanna
Butler, Lisa M.
O’Toole, Sandra
Plummer, Jasmine
Vlachos, Ioannis S.
Lundeberg, Joakim
Swarbrick, Alexander
Martelotto, Luciano G.
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_doaj_primary_oai_doaj_org_article_e72696809e1b4d6fbd26435761d09282
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_e72696809e1b4d6fbd26435761d09282
Other Identifiers
ISSN
2399-3642
E-ISSN
2399-3642
DOI
10.1038/s42003-024-07043-2
