SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
About this item
Full title
Author / Creator
Luo, Ruibang , Liu, Binghang , Xie, Yinlong , Li, Zhenyu , Huang, Weihua , Yuan, Jianying , He, Guangzhu , Chen, Yanxiang , Pan, Qi , Liu, Yunjie , Tang, Jingbo , Wu, Gengxiong , Zhang, Hao , Shi, Yujian , Liu, Yong , Yu, Chang , Wang, Bo , Lu, Yao , Han, Changlei , Cheung, David W , Yiu, Siu-Ming , Peng, Shaoliang , Xiaoqian, Zhu , Liu, Guangming , Liao, Xiangke , Li, Yingrui , Yang, Huanming , Wang, Jian , Lam, Tak-Wah and Wang, Jun
Publisher
United States: Oxford University Press
Journal title
Language
English
Formats
Publication information
Publisher
United States: Oxford University Press
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More information
Scope and Contents
Contents
Abstract
Background
There is a rapidly increasing amount of de novo genome assembly using next-generation sequencing (NGS) short reads; however, several big challenges remain to be overcome in order for this to be efficient and accurate. SOAPdenovo has been successfully applied to assemble many published genomes, but it still needs improvemen...
Alternative Titles
Full title
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Authors, Artists and Contributors
Author / Creator
Liu, Binghang
Xie, Yinlong
Li, Zhenyu
Huang, Weihua
Yuan, Jianying
He, Guangzhu
Chen, Yanxiang
Pan, Qi
Liu, Yunjie
Tang, Jingbo
Wu, Gengxiong
Zhang, Hao
Shi, Yujian
Liu, Yong
Yu, Chang
Wang, Bo
Lu, Yao
Han, Changlei
Cheung, David W
Yiu, Siu-Ming
Peng, Shaoliang
Xiaoqian, Zhu
Liu, Guangming
Liao, Xiangke
Li, Yingrui
Yang, Huanming
Wang, Jian
Lam, Tak-Wah
Wang, Jun
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_doaj_primary_oai_doaj_org_article_fe6a013bcda049eab4be4d2c23220601
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_fe6a013bcda049eab4be4d2c23220601
Other Identifiers
ISSN
2047-217X
E-ISSN
2047-217X
DOI
10.1186/2047-217X-1-18
