plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data
plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data
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Cold Spring Harbor: Cold Spring Harbor Laboratory Press
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English
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Cold Spring Harbor: Cold Spring Harbor Laboratory Press
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Motivation: Plasmids are stably maintained extra-chromosomal genetic elements that replicate independently from the host cell's chromosomes. Although plasmids harbor biomedically important genes, (such as genes involved in virulence and antibiotics resistance), there is a shortage of specialized software tools for extracting and assembling plasmid data from whole genome sequencing projects. Results: We present the plasmidSPAdes algorithm and software tool for assembling plasmids from whole genome sequencing data and benchmark its performance on a diverse set of bacterial genomes. Availability and implementation: PLASMID SPADES is publicly available at http://spades.bioinf.spbau.ru/plasmidSPAdes/...
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plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data
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TN_cdi_proquest_journals_2070793831
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https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_journals_2070793831
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2692-8205
DOI
10.1101/048942
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https://www.proquest.com/docview/2070793831?pq-origsite=primo&accountid=13902
