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rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_journals_2108692306

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

About this item

Full title

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

Publisher

Cold Spring Harbor: Cold Spring Harbor Laboratory Press

Journal title

bioRxiv, 2018-09

Language

English

Formats

Publication information

Publisher

Cold Spring Harbor: Cold Spring Harbor Laboratory Press

More information

Scope and Contents

Contents

Possibility to generate large RNA-seq datasets has led to development of various reference-based and de novo transcriptome assemblers with their own strengths and limitations. While reference-based tools are widely used in various transcriptomic studies, their application is limited to the model organisms with finished and annotated genomes. De nov...

Alternative Titles

Full title

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

Authors, Artists and Contributors

Identifiers

Primary Identifiers

Record Identifier

TN_cdi_proquest_journals_2108692306

Permalink

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_journals_2108692306

Other Identifiers

E-ISSN

2692-8205

DOI

10.1101/420208