A synthesis of bacterial and archaeal phenotypic trait data
A synthesis of bacterial and archaeal phenotypic trait data
About this item
Full title
Author / Creator
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States) , Madin, Joshua S. , Nielsen, Daniel A. , Brbic, Maria , Corkrey, Ross , Danko, David , Edwards, Kyle , Engqvist, Martin K. M. , Fierer, Noah , Geoghegan, Jemma L. , Gillings, Michael , Kyrpides, Nikos C. , Litchman, Elena , Mason, Christopher E. , Moore, Lisa , Nielsen, Søren L. , Paulsen, Ian T. , Price, Nathan D. , Reddy, T. B. K. , Richards, Matthew A. , Rocha, Eduardo P. C. , Schmidt, Thomas M. , Shaaban, Heba , Shukla, Maulik , Supek, Fran , Tetu, Sasha G. , Vieira-Silva, Sara , Wattam, Alice R. , Westfall, David A. and Westoby, Mark
Publisher
London: Nature Publishing Group UK
Journal title
Language
English
Formats
Publication information
Publisher
London: Nature Publishing Group UK
Subjects
More information
Scope and Contents
Contents
A synthesis of phenotypic and quantitative genomic traits is provided for bacteria and archaea, in the form of a scripted, reproducible workflow that standardizes and merges 26 sources. The resulting unified dataset covers 14 phenotypic traits, 5 quantitative genomic traits, and 4 environmental characteristics for approximately 170,000 strain-level and 15,000 species-aggregated records. It spans all habitats including soils, marine and fresh waters and sediments, host-associated and thermal. Trait data can find use in clarifying major dimensions of ecological strategy variation across species. They can also be used in conjunction with species and abundance sampling to characterize trait mixtures in communities and responses of traits along environmental gradients.
Measurement(s)
Trait • phenotypic trait • quantitative genomic trait
Technology Type(s)
digital curation
Factor Type(s)
habitat • species
Sample Characteristic - Organism
Archaea • Bacteria
Sample Characteristic - Location
global
Machine-accessible metadata file describing the reported data:
https://doi.org/10.6084/m9.figshare.12221732...
Alternative Titles
Full title
A synthesis of bacterial and archaeal phenotypic trait data
Authors, Artists and Contributors
Author / Creator
Madin, Joshua S.
Nielsen, Daniel A.
Brbic, Maria
Corkrey, Ross
Danko, David
Edwards, Kyle
Engqvist, Martin K. M.
Fierer, Noah
Geoghegan, Jemma L.
Gillings, Michael
Kyrpides, Nikos C.
Litchman, Elena
Mason, Christopher E.
Moore, Lisa
Nielsen, Søren L.
Paulsen, Ian T.
Price, Nathan D.
Reddy, T. B. K.
Richards, Matthew A.
Rocha, Eduardo P. C.
Schmidt, Thomas M.
Shaaban, Heba
Shukla, Maulik
Supek, Fran
Tetu, Sasha G.
Vieira-Silva, Sara
Wattam, Alice R.
Westfall, David A.
Westoby, Mark
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_proquest_journals_2489908298
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_journals_2489908298
Other Identifiers
ISSN
2052-4463
E-ISSN
2052-4463
DOI
10.1038/s41597-020-0497-4
