MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
About this item
Full title
Author / Creator
Schapiro, Denis , Sokolov, Artem , Yapp, Clarence , Muhlich, Jeremy L , Hess, Joshua , Jia-Ren, Lin , Yu-An, Chen , Nariya, Maulik K , Baker, Gregory J , Ruokonen, Juha , Maliga, Zoltan , Jacobson, Connor A , Farhi, Samouil L , Abbondanza, Domenic , Mckinley, Eliot T , Betts, Courtney , Regev, Aviv , Coffey, Robert J , Coussens, Lisa M , Santagata, Sandro and Sorger, Peter K
Publisher
Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title
Language
English
Formats
Publication information
Publisher
Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Subjects
More information
Scope and Contents
Contents
ABSTRACT Highly multiplexed tissue imaging makes molecular analysis of single cells possible in a preserved spatial context. However, reproducible analysis of the underlying data poses a substantial computational challenge. Here we describe a modular and open-source computational pipeline (MCMICRO) for performing the sequential steps needed to tran...
Alternative Titles
Full title
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
Authors, Artists and Contributors
Author / Creator
Sokolov, Artem
Yapp, Clarence
Muhlich, Jeremy L
Hess, Joshua
Jia-Ren, Lin
Yu-An, Chen
Nariya, Maulik K
Baker, Gregory J
Ruokonen, Juha
Maliga, Zoltan
Jacobson, Connor A
Farhi, Samouil L
Abbondanza, Domenic
Mckinley, Eliot T
Betts, Courtney
Regev, Aviv
Coffey, Robert J
Coussens, Lisa M
Santagata, Sandro
Sorger, Peter K
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_proquest_journals_2504881047
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_journals_2504881047
Other Identifiers
E-ISSN
2692-8205
DOI
10.1101/2021.03.15.435473
How to access this item
https://www.proquest.com/docview/2504881047?pq-origsite=primo&accountid=13902
