The adult human brain likely comprises more than a thousand kinds of neurons, and an unknown number of glial cell types, but how cellular diversity arises during early brain development is not known. Here, in order to reveal the precise sequence of events during early brain development, we used single-cell RNA sequencing and spatial transcriptomics to uncover cell states and trajectories in human brains at 5 - 14 post-conceptional weeks (p.c.w.). We identified twelve major classes and over 600 distinct cell states, which mapped to precise spatial anatomical domains at 5 p.c.w. We uncovered detailed differentiation trajectories of the human forebrain, and a surprisingly large number of region-specific glioblasts maturing into distinct pre-astrocytes and pre-oligodendrocyte precursor cells (pre-OPCs). Our findings reveal the emergence of cell types during the critical first trimester of human brain development. Competing Interest Statement Z.A. and J.L. are scientific consultants for 10x Genomics, which holds IP rights to the Spatial Transcriptomics (Visium) technology. S.L. and L.E.B. are majority shareholders in EEL Transcriptomics AB, which owns the intellectual property for EEL. All other authors declare that they have no competing interests. Footnotes * https://github.com/linnarsson-lab/developing-human-brain...

Comprehensive cell atlas of the first-trimester developing human brain

10.1101/2022.10.24.513487