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N‐SDM: a high‐performance computing pipeline for Nested Species Distribution Modelling

N‐SDM: a high‐performance computing pipeline for Nested Species Distribution Modelling

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_miscellaneous_2834280501

N‐SDM: a high‐performance computing pipeline for Nested Species Distribution Modelling

About this item

Full title

N‐SDM: a high‐performance computing pipeline for Nested Species Distribution Modelling

Publisher

Oxford, UK: Blackwell Publishing Ltd

Journal title

Ecography (Copenhagen), 2023-06, Vol.2023 (6), p.n/a

Language

English

Formats

Publication information

Publisher

Oxford, UK: Blackwell Publishing Ltd

More information

Scope and Contents

Contents

Predicting contemporary and future species distributions is relevant for science and decision making, yet the development of high‐resolution spatial predictions for numerous taxonomic groups and regions is limited by the scalability of available modelling tools. Uniting species distribution modelling (SDM) techniques into one high‐performance computing (HPC) pipeline, we developed N‐SDM, an SDM platform aimed at delivering reproducible outputs for standard biodiversity assessments. N‐SDM was built around a spatially‐nested framework, intended at facilitating the combined use of species occurrence data retrieved from multiple sources and at various spatial scales. N‐SDM allows combining two models fitted with species and covariate data retrieved from global to regional scales, which is useful for addressing the issue of spatial niche truncation. The set of state‐of‐the‐art SDM features embodied in N‐SDM includes a newly devised covariate selection procedure, five modelling algorithms, an algorithm‐specific hyperparameter grid search, and the ensemble of small‐models approach. N‐SDM is designed to be run on HPC environments, allowing the parallel processing of thousands of species at the same time. All the information required for installing and running N‐SDM is openly available on the GitHub repository https://github.com/N‐SDM/N‐SDM....

Alternative Titles

Full title

N‐SDM: a high‐performance computing pipeline for Nested Species Distribution Modelling

Identifiers

Primary Identifiers

Record Identifier

TN_cdi_proquest_miscellaneous_2834280501

Permalink

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_miscellaneous_2834280501

Other Identifiers

ISSN

0906-7590

E-ISSN

1600-0587

DOI

10.1111/ecog.06540

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