Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequen...
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
About this item
Full title
Author / Creator
Greninger, Alexander L. , Naccache, Samia N. , Federman, Scot , Yu, Guixia , Mbala, Placide , Bres, Vanessa , Stryke, Doug , Bouquet, Jerome , Somasekar, Sneha , Linnen, Jeffrey M. , Dodd, Roger , Mulembakani, Prime , Schneider, Bradley S. , Muyembe-Tamfum, Jean-Jacques , Stramer, Susan L. and Chiu, Charles Y.
Publisher
England: BioMed Central Ltd
Journal title
Language
English
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Publication information
Publisher
England: BioMed Central Ltd
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Scope and Contents
Contents
We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web-based pipeline for real-time bioinformatics analysis on a computational server or laptop (MetaPORE). At titers ranging from 10(7)-10(8) c...
Alternative Titles
Full title
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
Authors, Artists and Contributors
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Primary Identifiers
Record Identifier
TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4587849
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4587849
Other Identifiers
ISSN
1756-994X
E-ISSN
1756-994X
DOI
10.1186/s13073-015-0220-9
