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Profiling RNA editing in human tissues: towards the inosinome Atlas

Profiling RNA editing in human tissues: towards the inosinome Atlas

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4598827

Profiling RNA editing in human tissues: towards the inosinome Atlas

About this item

Full title

Profiling RNA editing in human tissues: towards the inosinome Atlas

Publisher

London: Nature Publishing Group UK

Journal title

Scientific reports, 2015-10, Vol.5 (1), p.14941-14941, Article 14941

Language

English

Formats

Publication information

Publisher

London: Nature Publishing Group UK

More information

Scope and Contents

Contents

Adenine to Inosine RNA editing is a widespread co- and post-transcriptional mechanism mediated by ADAR enzymes acting on double stranded RNA. It has a plethora of biological effects, appears to be particularly pervasive in humans with respect to other mammals and is implicated in a number of diverse human pathologies. Here we present the first human inosinome atlas comprising 3,041,422 A-to-I events identified in six tissues from three healthy individuals. Matched directional total-RNA-Seq and whole genome sequence datasets were generated and analysed within a dedicated computational framework, also capable of detecting hyper-edited reads. Inosinome profiles are tissue specific and edited gene sets consistently show enrichment of genes involved in neurological disorders and cancer. Overall frequency of editing also varies, but is strongly correlated with ADAR expression levels. The inosinome database is available at:
http://srv00.recas.ba.infn.it/editing
....

Alternative Titles

Full title

Profiling RNA editing in human tissues: towards the inosinome Atlas

Identifiers

Primary Identifiers

Record Identifier

TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4598827

Permalink

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4598827

Other Identifiers

ISSN

2045-2322

E-ISSN

2045-2322

DOI

10.1038/srep14941

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