The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
About this item
Full title
Author / Creator
Huntemann, Marcel , Ivanova, Natalia N. , Mavromatis, Konstantinos , Tripp, H. James , Paez-Espino, David , Tennessen, Kristin , Palaniappan, Krishnaveni , Szeto, Ernest , Pillay, Manoj , Chen, I-Min A. , Pati, Amrita , Nielsen, Torben , Markowitz, Victor M. , Kyrpides, Nikos C. and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Publisher
England: BioMed Central Ltd
Journal title
Language
English
Formats
Publication information
Publisher
England: BioMed Central Ltd
Subjects
More information
Scope and Contents
Contents
The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provided via the IMG submission site. Users must first define their an...
Alternative Titles
Full title
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
Authors, Artists and Contributors
Author / Creator
Ivanova, Natalia N.
Mavromatis, Konstantinos
Tripp, H. James
Paez-Espino, David
Tennessen, Kristin
Palaniappan, Krishnaveni
Szeto, Ernest
Pillay, Manoj
Chen, I-Min A.
Pati, Amrita
Nielsen, Torben
Markowitz, Victor M.
Kyrpides, Nikos C.
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4766715
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4766715
Other Identifiers
ISSN
1944-3277
E-ISSN
1944-3277,2524-6372
DOI
10.1186/s40793-016-0138-x
