Sharing and community curation of mass spectrometry data with GNPS
Sharing and community curation of mass spectrometry data with GNPS
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Author / Creator
Wang, Mingxun , Carver, Jeremy J , Phelan, Vanessa V , Sanchez, Laura M , Garg, Neha , Peng, Yao , Nguyen, Don Duy , Watrous, Jeramie , Kapono, Clifford A , Luzzatto-Knaan, Tal , Porto, Carla , Bouslimani, Amina , Melnik, Alexey V , Meehan, Michael J , Liu, Wei-Ting , Crüsemann, Max , Boudreau, Paul D , Esquenazi, Eduardo , Sandoval-Calderón, Mario , Kersten, Roland D , Pace, Laura A , Quinn, Robert A , Duncan, Katherine R , Hsu, Cheng-Chih , Floros, Dimitrios J , Gavilan, Ronnie G , Kleigrewe, Karin , Northen, Trent , Dutton, Rachel J , Parrot, Delphine , Carlson, Erin E , Aigle, Bertrand , Michelsen, Charlotte F , Jelsbak, Lars , Sohlenkamp, Christian , Pevzner, Pavel , Edlund, Anna , McLean, Jeffrey , Piel, Jörn , Murphy, Brian T , Gerwick, Lena , Liaw, Chih-Chuang , Yang, Yu-Liang , Humpf, Hans-Ulrich , Maansson, Maria , Keyzers, Robert A , Sims, Amy C , Johnson, Andrew R. , Sidebottom, Ashley M , Sedio, Brian E , Klitgaard, Andreas , Larson, Charles B , P., Cristopher A Boya , Torres-Mendoza, Daniel , Gonzalez, David J , Silva, Denise B , Marques, Lucas M , Demarque, Daniel P , Pociute, Egle , O'Neill, Ellis C , Briand, Enora , Helfrich, Eric J. N. , Granatosky, Eve A , Glukhov, Evgenia , Ryffel, Florian , Houson, Hailey , Mohimani, Hosein , Kharbush, Jenan J , Zeng, Yi , Vorholt, Julia A , Kurita, Kenji L , Charusanti, Pep , McPhail, Kerry L , Nielsen, Kristian Fog , Vuong, Lisa , Elfeki, Maryam , Traxler, Matthew F , Engene, Niclas , Koyama, Nobuhiro , Vining, Oliver B , Baric, Ralph , Silva, Ricardo R , Mascuch, Samantha J , Tomasi, Sophie , Jenkins, Stefan , Macherla, Venkat , Hoffman, Thomas , Agarwal, Vinayak , Williams, Philip G , Dai, Jingqui , Neupane, Ram , Gurr, Joshua , Rodríguez, Andrés M. C. , Lamsa, Anne , Zhang, Chen , Dorrestein, Kathleen , Duggan, Brendan M , Almaliti, Jehad , Allard, Pierre-Marie and Phapale, Prasad
Journal title
Language
English
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Scope and Contents
Contents
The potential of the diverse chemistries present in natural products (NP) for biotechnology and medicine remains untapped because NP databases are not searchable with raw data and the NP community has no way to share data other than in published papers. Although mass spectrometry techniques are well-suited to high-throughput characterization of natural products, there is a pressing need for an infrastructure to enable sharing and curation of data. We present Global Natural Products Social molecular networking (GNPS,
http://gnps.ucsd.edu
), an open-access knowledge base for community wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data. In GNPS crowdsourced curation of freely available community-wide reference MS libraries will underpin improved annotations. Data-driven social-networking should facilitate identification of spec...
Alternative Titles
Full title
Sharing and community curation of mass spectrometry data with GNPS
Authors, Artists and Contributors
Author / Creator
Carver, Jeremy J
Phelan, Vanessa V
Sanchez, Laura M
Garg, Neha
Peng, Yao
Nguyen, Don Duy
Watrous, Jeramie
Kapono, Clifford A
Luzzatto-Knaan, Tal
Porto, Carla
Bouslimani, Amina
Melnik, Alexey V
Meehan, Michael J
Liu, Wei-Ting
Crüsemann, Max
Boudreau, Paul D
Esquenazi, Eduardo
Sandoval-Calderón, Mario
Kersten, Roland D
Pace, Laura A
Quinn, Robert A
Duncan, Katherine R
Hsu, Cheng-Chih
Floros, Dimitrios J
Gavilan, Ronnie G
Kleigrewe, Karin
Northen, Trent
Dutton, Rachel J
Parrot, Delphine
Carlson, Erin E
Aigle, Bertrand
Michelsen, Charlotte F
Jelsbak, Lars
Sohlenkamp, Christian
Pevzner, Pavel
Edlund, Anna
McLean, Jeffrey
Piel, Jörn
Murphy, Brian T
Gerwick, Lena
Liaw, Chih-Chuang
Yang, Yu-Liang
Humpf, Hans-Ulrich
Maansson, Maria
Keyzers, Robert A
Sims, Amy C
Johnson, Andrew R.
Sidebottom, Ashley M
Sedio, Brian E
Klitgaard, Andreas
Larson, Charles B
P., Cristopher A Boya
Torres-Mendoza, Daniel
Gonzalez, David J
Silva, Denise B
Marques, Lucas M
Demarque, Daniel P
Pociute, Egle
O'Neill, Ellis C
Briand, Enora
Helfrich, Eric J. N.
Granatosky, Eve A
Glukhov, Evgenia
Ryffel, Florian
Houson, Hailey
Mohimani, Hosein
Kharbush, Jenan J
Zeng, Yi
Vorholt, Julia A
Kurita, Kenji L
Charusanti, Pep
McPhail, Kerry L
Nielsen, Kristian Fog
Vuong, Lisa
Elfeki, Maryam
Traxler, Matthew F
Engene, Niclas
Koyama, Nobuhiro
Vining, Oliver B
Baric, Ralph
Silva, Ricardo R
Mascuch, Samantha J
Tomasi, Sophie
Jenkins, Stefan
Macherla, Venkat
Hoffman, Thomas
Agarwal, Vinayak
Williams, Philip G
Dai, Jingqui
Neupane, Ram
Gurr, Joshua
Rodríguez, Andrés M. C.
Lamsa, Anne
Zhang, Chen
Dorrestein, Kathleen
Duggan, Brendan M
Almaliti, Jehad
Allard, Pierre-Marie
Phapale, Prasad
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5321674
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5321674
Other Identifiers
ISSN
1087-0156
E-ISSN
1546-1696
DOI
10.1038/nbt.3597
