Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
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Author / Creator
Alberti, Adriana , Poulain, Julie , Engelen, Stefan , Labadie, Karine , Romac, Sarah , Ferrera, Isabel , Albini, Guillaume , Aury, Jean-Marc , Belser, Caroline , Bertrand, Alexis , Cruaud, Corinne , Da Silva, Corinne , Dossat, Carole , Gavory, Frédérick , Gas, Shahinaz , Guy, Julie , Haquelle, Maud , Jacoby, E'krame , Jaillon, Olivier , Lemainque, Arnaud , Pelletier, Eric , Samson, Gaëlle , Wessner, Mark , Acinas, Silvia G. , Royo-Llonch, Marta , Cornejo-Castillo, Francisco M. , Logares, Ramiro , Fernández-Gómez, Beatriz , Bowler, Chris , Cochrane, Guy , Amid, Clara , Hoopen, Petra Ten , De Vargas, Colomban , Grimsley, Nigel , Desgranges, Elodie , Kandels-Lewis, Stefanie , Ogata, Hiroyuki , Poulton, Nicole , Sieracki, Michael E. , Stepanauskas, Ramunas , Sullivan, Matthew B. , Brum, Jennifer R. , Duhaime, Melissa B. , Poulos, Bonnie T. , Hurwitz, Bonnie L. , Pesant, Stéphane , Karsenti, Eric , Wincker, Patrick , Genoscope Technical Team and Tara Oceans Consortium Coordinators
Publisher
London: Nature Publishing Group UK
Journal title
Language
English
Formats
Publication information
Publisher
London: Nature Publishing Group UK
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More information
Scope and Contents
Contents
A unique collection of oceanic samples was gathered by the
Tara
Oceans expeditions (2009–2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurements. Thanks to recent advances in the field of genomics, extensive sequencing has been performed for a deep genomic analysis of this huge collection of samples. A strategy based on different approaches, such as metabarcoding, metagenomics, single-cell genomics and metatranscriptomics, has been chosen for analysis of size-fractionated plankton communities. Here, we provide detailed procedures applied for genomic data generation, from nucleic acids extraction to sequence production, and we describe registries of genomics datasets available at the European Nucleotide Archive (ENA,
www.ebi.ac.uk/ena
). The association of these metadata to the experimental procedures applied for their generation will help the scientific community to access these data and facilitate their analysis. This paper complements other efforts to provide a full description of experiments and open science resources generated from the
Tara
Oceans project, fur...
Alternative Titles
Full title
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Authors, Artists and Contributors
Author / Creator
Poulain, Julie
Engelen, Stefan
Labadie, Karine
Romac, Sarah
Ferrera, Isabel
Albini, Guillaume
Aury, Jean-Marc
Belser, Caroline
Bertrand, Alexis
Cruaud, Corinne
Da Silva, Corinne
Dossat, Carole
Gavory, Frédérick
Gas, Shahinaz
Guy, Julie
Haquelle, Maud
Jacoby, E'krame
Jaillon, Olivier
Lemainque, Arnaud
Pelletier, Eric
Samson, Gaëlle
Wessner, Mark
Acinas, Silvia G.
Royo-Llonch, Marta
Cornejo-Castillo, Francisco M.
Logares, Ramiro
Fernández-Gómez, Beatriz
Bowler, Chris
Cochrane, Guy
Amid, Clara
Hoopen, Petra Ten
De Vargas, Colomban
Grimsley, Nigel
Desgranges, Elodie
Kandels-Lewis, Stefanie
Ogata, Hiroyuki
Poulton, Nicole
Sieracki, Michael E.
Stepanauskas, Ramunas
Sullivan, Matthew B.
Brum, Jennifer R.
Duhaime, Melissa B.
Poulos, Bonnie T.
Hurwitz, Bonnie L.
Pesant, Stéphane
Karsenti, Eric
Wincker, Patrick
Genoscope Technical Team
Tara Oceans Consortium Coordinators
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5538240
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5538240
Other Identifiers
ISSN
2052-4463
E-ISSN
2052-4463
DOI
10.1038/sdata.2017.93
