Supervised enhancer prediction with epigenetic pattern recognition and targeted validation
Supervised enhancer prediction with epigenetic pattern recognition and targeted validation
About this item
Full title
Author / Creator
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States) , Sethi, Anurag , Gu, Mengting , Gumusgoz, Emrah , Chan, Landon , Yan, Koon-Kiu , Rozowsky, Joel , Barozzi, Iros , Afzal, Veena , Akiyama, Jennifer A. , Plajzer-Frick, Ingrid , Yan, Chengfei , Novak, Catherine S. , Kato, Momoe , Garvin, Tyler H. , Pham, Quan , Harrington, Anne , Mannion, Brandon J. , Lee, Elizabeth A. , Fukuda-Yuzawa, Yoko , Visel, Axel , Dickel, Diane E. , Yip, Kevin Y. , Sutton, Richard , Pennacchio, Len A. and Gerstein, Mark
Publisher
New York: Nature Publishing Group US
Journal title
Language
English
Formats
Publication information
Publisher
New York: Nature Publishing Group US
Subjects
More information
Scope and Contents
Contents
Enhancers are important non-coding elements, but they have traditionally been hard to characterize experimentally. The development of massively parallel assays allows the characterization of large numbers of enhancers for the first time. Here, we developed a framework using
Drosophila
STARR-seq to create shape-matching filters based on meta-p...
Alternative Titles
Full title
Supervised enhancer prediction with epigenetic pattern recognition and targeted validation
Authors, Artists and Contributors
Author / Creator
Sethi, Anurag
Gu, Mengting
Gumusgoz, Emrah
Chan, Landon
Yan, Koon-Kiu
Rozowsky, Joel
Barozzi, Iros
Afzal, Veena
Akiyama, Jennifer A.
Plajzer-Frick, Ingrid
Yan, Chengfei
Novak, Catherine S.
Kato, Momoe
Garvin, Tyler H.
Pham, Quan
Harrington, Anne
Mannion, Brandon J.
Lee, Elizabeth A.
Fukuda-Yuzawa, Yoko
Visel, Axel
Dickel, Diane E.
Yip, Kevin Y.
Sutton, Richard
Pennacchio, Len A.
Gerstein, Mark
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8073243
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8073243
Other Identifiers
ISSN
1548-7091
E-ISSN
1548-7105
DOI
10.1038/s41592-020-0907-8
