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Select record 21
ArticlesPeer ReviewedFull Text
Rapid response of fly populations to gene dosage across development and generations
Author / Creator:Li, Xueying C. ; Gandara, Lautaro ; Ekelöf, Måns ; Richter, Kerstin ; Alexandrov, Theodore ; Crocker, Justin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-05, Vol.15 (1), p.4551-14, Article 4551
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3D molecular cartography using LC–MS facilitated by Optimus and 'ili software
Author / Creator:Protsyuk, Ivan ; Melnik, Alexey V ; Nothias, Louis-Felix ; Rappez, Luca ; Phapale, Prasad ; Aksenov, Alexander A ; Bouslimani, Amina ; Ryazanov, Sergey ; Dorrestein, Pieter C ; Alexandrov, Theodore
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2018-01, Vol.13 (1), p.134-154
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Where imaging mass spectrometry stands: here are the numbers
Author / Creator:Palmer, Andrew ; Trede, Dennis ; Alexandrov, Theodore
Publisher:New York: Springer US
Journal title:Metabolomics, 2016-06, Vol.12 (6), p.1, Article 107
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Single‐cell transcriptomics reveals immune response of intestinal cell types to viral infection
Author / Creator:Triana, Sergio ; Stanifer, Megan L ; Metz‐Zumaran, Camila ; Shahraz, Mohammed ; Mukenhirn, Markus ; Kee, Carmon ; Serger, Clara ; Koschny, Ronald ; Ordoñez‐Rueda, Diana ; Paulsen, Malte ; Benes, Vladimir ; Boulant, Steeve ; Alexandrov, Theodore
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2021-07, Vol.17 (7), p.e9833-n/a
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Lifestyle chemistries from phones for individual profiling
Author / Creator:Bouslimani, Amina ; Melnik, Alexey V. ; Xu, Zhenjiang ; Amir, Amnon ; da Silva, Ricardo R. ; Wang, Mingxun ; Bandeira, Nuno ; Alexandrov, Theodore ; Knight, Rob ; Dorrestein, Pieter C.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2016-11, Vol.113 (48), p.E7645-E7654
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Quantification reveals early dynamics in Drosophila maternal gradients
Author / Creator:Shlemov, Alex ; Alexandrov, Theodore ; Golyandina, Nina ; Holloway, David ; Baumgartner, Stefan ; Spirov, Alexander V.
Publisher:San Francisco, CA USA: Public Library of Science
Journal title:PloS one, 2021-08, Vol.16 (8), p.e0244701-e0244701
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Phenalenone-type phytoalexins mediate resistance of banana plants (Musa spp.) to the burrowing nematode Radopholus similis
Author / Creator:Hölscher, Dirk ; Dhakshinamoorthy, Suganthagunthalam ; Alexandrov, Theodore ; Becker, Michael ; Bretschneider, Tom ; Buerkert, Andreas ; Crecelius, Anna C. ; Waele, Dirk De ; Elsen, Annemie ; Heckel, David G. ; Heklau, Heike ; Hertweck, Christian ; Kai, Marco ; Knop, Katrin ; Krafft, Christoph ; Maddula, Ravi K. ; Matthäus, Christian ; Popp, Jürgen ; Schneider, Bernd ; Schubert, Ulrich S. ; Sikora, Richard A. ; Svatoš, Aleš ; Swennen, Rony L.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-01, Vol.111 (1), p.105-110
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Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae
Author / Creator:Luzzatto-Knaan, Tal ; Garg, Neha ; Wang, Mingxun ; Glukhov, Evgenia ; Peng, Yao ; Ackermann, Gail ; Amir, Amnon ; Duggan, Brendan M ; Ryazanov, Sergey ; Gerwick, Lena ; Knight, Rob ; Alexandrov, Theodore ; Bandeira, Nuno ; Gerwick, William H ; Dorrestein, Pieter C
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2017-05, Vol.6
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The Community Ecology of Microbial Molecules
Author / Creator:Quinn, Robert A. ; Alexandrov, Theodore
Publisher:Boston: Springer US
Journal title:Journal of chemical ecology, 2014-12, Vol.40 (11-12), p.1161-1162
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Facilitating Imaging Mass Spectrometry of Microbial Specialized Metabolites with METASPACE
Author / Creator:Nguyen, Don D. ; Saharuka, Veronika ; Kovalev, Vitaly ; Stuart, Lachlan ; Del Prete, Massimo ; Lubowiecka, Kinga ; De Mot, René ; Venturi, Vittorio ; Alexandrov, Theodore
Publisher:Basel: MDPI AG
Journal title:Metabolites, 2021-07, Vol.11 (8), p.477
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Learning How to Run a Lab: Interviews with Principal Investigators
Author / Creator:Alexandrov, Theodore ; Bourne, Philip E.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2013-11, Vol.9 (11), p.e1003349-e1003349
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Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis
Author / Creator:Melnik, Alexey V. ; Vázquez-Baeza, Yoshiki ; Aksenov, Alexander A. ; Hyde, Embriette ; McAvoy, Andrew C. ; Wang, Mingxun ; da Silva, Ricardo R. ; Protsyuk, Ivan ; Wu, Jason V. ; Bouslimani, Amina ; Lim, Yan Wei ; Luzzatto-Knaan, Tal ; Comstock, William ; Quinn, Robert A. ; Wong, Richard ; Humphrey, Greg ; Ackermann, Gail ; Spivey, Timothy ; Brouha, Sharon S. ; Bandeira, Nuno ; Lin, Grace Y. ; Rohwer, Forest ; Conrad, Douglas J. ; Alexandrov, Theodore ; Knight, Rob ; Dorrestein, Pieter C. ; Garg, Neha
Publisher:Washington: American Society for Microbiology
Journal title:mSystems, 2019-09, Vol.4 (5)
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Select record 33
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Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways
Author / Creator:Poletti, Martina ; Treveil, Agatha ; Csabai, Luca ; Gul, Leila ; Modos, Dezso ; Madgwick, Matthew ; Olbei, Marton ; Bohar, Balazs ; Valdeolivas, Alberto ; Turei, Denes ; Verstockt, Bram ; Triana, Sergio ; Alexandrov, Theodore ; Saez-Rodriguez, Julio ; Stanifer, Megan L. ; Boulant, Steeve ; Korcsmaros, Tamas
Publisher:London: Nature Publishing Group UK
Journal title:NPJ systems biology and applications, 2022-05, Vol.8 (1), p.15-19, Article 15
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A model for network-based identification and pharmacological targeting of aberrant, replication-permissive transcriptional programs induced by viral infection
Author / Creator:Laise, Pasquale ; Stanifer, Megan L. ; Bosker, Gideon ; Sun, Xiaoyun ; Triana, Sergio ; Doldan, Patricio ; La Manna, Federico ; De Menna, Marta ; Realubit, Ronald B. ; Pampou, Sergey ; Karan, Charles ; Alexandrov, Theodore ; Kruithof-de Julio, Marianna ; Califano, Andrea ; Boulant, Steeve ; Alvarez, Mariano J.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2022-07, Vol.5 (1), p.714-12, Article 714
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Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen
Author / Creator:Garg, Neha ; Zeng, Yi ; Edlund, Anna ; Melnik, Alexey V. ; Sanchez, Laura M. ; Mohimani, Hosein ; Gurevich, Alexey ; Miao, Vivian ; Schiffler, Stefan ; Lim, Yan Wei ; Luzzatto-Knaan, Tal ; Cai, Shengxin ; Rohwer, Forest ; Pevzner, Pavel A. ; Cichewicz, Robert H. ; Alexandrov, Theodore ; Dorrestein, Pieter C.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2016-11, Vol.1 (6)
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The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013
Author / Creator:de Ridder, Jeroen ; Bromberg, Yana ; Michaut, Magali ; Satagopam, Venkata P. ; Corpas, Manuel ; Macintyre, Geoff ; Alexandrov, Theodore
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2013-11, Vol.9 (11), p.e1003350-e1003350
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SpaceM reveals metabolic states of single cells
Author / Creator:Rappez, Luca ; Stadler, Mira ; Triana, Sergio ; Gathungu, Rose Muthoni ; Ovchinnikova, Katja ; Phapale, Prasad ; Heikenwalder, Mathias ; Alexandrov, Theodore
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2021-07, Vol.18 (7), p.799-805
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Feature-based molecular networking in the GNPS analysis environment
Author / Creator:Nothias, Louis-Félix ; Petras, Daniel ; Schmid, Robin ; Dührkop, Kai ; Rainer, Johannes ; Sarvepalli, Abinesh ; Protsyuk, Ivan ; Ernst, Madeleine ; Tsugawa, Hiroshi ; Fleischauer, Markus ; Aicheler, Fabian ; Aksenov, Alexander A. ; Alka, Oliver ; Allard, Pierre-Marie ; Barsch, Aiko ; Cachet, Xavier ; Caraballo-Rodriguez, Andres Mauricio ; Da Silva, Ricardo R. ; Dang, Tam ; Garg, Neha ; Gauglitz, Julia M. ; Gurevich, Alexey ; Isaac, Giorgis ; Jarmusch, Alan K. ; Kameník, Zdeněk ; Kang, Kyo Bin ; Kessler, Nikolas ; Koester, Irina ; Korf, Ansgar ; Le Gouellec, Audrey ; Ludwig, Marcus ; Martin H., Christian ; McCall, Laura-Isobel ; McSayles, Jonathan ; Meyer, Sven W. ; Mohimani, Hosein ; Morsy, Mustafa ; Moyne, Oriane ; Neumann, Steffen ; Neuweger, Heiko ; Nguyen, Ngoc Hung ; Nothias-Esposito, Melissa ; Paolini, Julien ; Phelan, Vanessa V. ; Pluskal, Tomáš ; Quinn, Robert A. ; Rogers, Simon ; Shrestha, Bindesh ; Tripathi, Anupriya ; van der Hooft, Justin J. J. ; Vargas, Fernando ; Weldon, Kelly C. ; Witting, Michael ; Yang, Heejung ; Zhang, Zheng ; Zubeil, Florian ; Kohlbacher, Oliver ; Böcker, Sebastian ; Alexandrov, Theodore ; Bandeira, Nuno ; Wang, Mingxun ; Dorrestein, Pieter C.
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2020-09, Vol.17 (9), p.905-908
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FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy
Author / Creator:van der Weijden, Vera A. ; Stötzel, Maximilian ; Iyer, Dhanur P. ; Fauler, Beatrix ; Gralinska, Elzbieta ; Shahraz, Mohammed ; Meierhofer, David ; Vingron, Martin ; Rulands, Steffen ; Alexandrov, Theodore ; Mielke, Thorsten ; Bulut-Karslioglu, Aydan
Publisher:London: Nature Publishing Group UK
Journal title:Nature cell biology, 2024-02, Vol.26 (2), p.181-193
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Enrichment analysis for spatial and single-cell metabolomics accounting for molecular ambiguity
Author / Creator:Wadie, Bishoy ; Molenaar, Martijn R ; Maciel Vieira, Lucas ; Alexandrov, Theodore
Journal title:Bioinformatics advances, 2025-05
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Rapid response of fly populations to gene dosage across development and generations

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3D molecular cartography using LC–MS facilitated by Optimus and 'ili software

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Where imaging mass spectrometry stands: here are the numbers

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Single‐cell transcriptomics reveals immune response of intestinal cell types to viral infection

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Lifestyle chemistries from phones for individual profiling

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Quantification reveals early dynamics in Drosophila maternal gradients

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Phenalenone-type phytoalexins mediate resistance of banana plants (Musa spp.) to the burrowing nematode Radopholus similis

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Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae

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The Community Ecology of Microbial Molecules

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Facilitating Imaging Mass Spectrometry of Microbial Specialized Metabolites with METASPACE

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Learning How to Run a Lab: Interviews with Principal Investigators

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Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis

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Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways

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A model for network-based identification and pharmacological targeting of aberrant, replication-permissive transcriptional programs induced by viral infection

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Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

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The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013

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SpaceM reveals metabolic states of single cells

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Feature-based molecular networking in the GNPS analysis environment

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FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy

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Enrichment analysis for spatial and single-cell metabolomics accounting for molecular ambiguity

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