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143 results for Alm,+Eric+J

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Select record 21
ArticlesPeer ReviewedFull Text
Salt-responsive gut commensal modulates TH17 axis and disease
Author / Creator:Wilck, Nicola ; Matus, Mariana G. ; Kearney, Sean M. ; Olesen, Scott W. ; Forslund, Kristoffer ; Bartolomaeus, Hendrik ; Haase, Stefanie ; Mähler, Anja ; Balogh, András ; Markó, Lajos ; Vvedenskaya, Olga ; Kleiner, Friedrich H. ; Tsvetkov, Dmitry ; Klug, Lars ; Costea, Paul I. ; Sunagawa, Shinichi ; Maier, Lisa ; Rakova, Natalia ; Schatz, Valentin ; Neubert, Patrick ; Frätzer, Christian ; Krannich, Alexander ; Gollasch, Maik ; Grohme, Diana A. ; Côrte-Real, Beatriz F. ; Gerlach, Roman G. ; Basic, Marijana ; Typas, Athanasios ; Wu, Chuan ; Titze, Jens M. ; Jantsch, Jonathan ; Boschmann, Michael ; Dechend, Ralf ; Kleinewietfeld, Markus ; Kempa, Stefan ; Bork, Peer ; Linker, Ralf A. ; Alm, Eric J. ; Müller, Dominik N.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2017-11, Vol.551 (7682), p.585-589
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Population Genomics of Early Events in the Ecological Differentiation of Bacteria
Author / Creator:Shapiro, B. Jesse ; Friedman, Jonathan ; Cordero, Otto X. ; Preheim, Sarah P. ; Timberlake, Sonia C. ; Szabó, Gitta ; Polz, Martin F. ; J. Alm, Eric
Publisher:Washington, DC: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2012-04, Vol.336 (6077), p.48-51
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ArticlesPeer ReviewedFull Text
Framework for rational donor selection in fecal microbiota transplant clinical trials
Author / Creator:Duvallet, Claire ; Zellmer, Caroline ; Panchal, Pratik ; Budree, Shrish ; Osman, Majdi ; Alm, Eric J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-10, Vol.14 (10), p.e0222881
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ArticlesPeer ReviewedFull Text
Host lifestyle affects human microbiota on daily timescales
Author / Creator:David, Lawrence A ; Materna, Arne C ; Friedman, Jonathan ; Campos-Baptista, Maria I ; Blackburn, Matthew C ; Perrotta, Allison ; Erdman, Susan E ; Alm, Eric J
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2014-01, Vol.15 (7), p.R89-3286, Article R89
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ArticlesPeer ReviewedFull Text
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
Author / Creator:Weiss, Sophie ; Van Treuren, Will ; Lozupone, Catherine ; Faust, Karoline ; Friedman, Jonathan ; Deng, Ye ; Xia, Li Charlie ; Xu, Zhenjiang Zech ; Ursell, Luke ; Alm, Eric J ; Birmingham, Amanda ; Cram, Jacob A ; Fuhrman, Jed A ; Raes, Jeroen ; Sun, Fengzhu ; Zhou, Jizhong ; Knight, Rob
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2016-07, Vol.10 (7), p.1669-1681
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ArticlesPeer ReviewedFull Text
Ecology drives a global network of gene exchange connecting the human microbiome
Author / Creator:Smillie, Chris S. ; Smith, Mark B. ; Friedman, Jonathan ; Cordero, Otto X. ; David, Lawrence A. ; Alm, Eric J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2011-12, Vol.480 (7376), p.241-244
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ArticlesPeer ReviewedFull Text
Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools
Author / Creator:Jiang, Xiaofang ; Hall, Andrew Brantley ; Xavier, Ramnik J. ; Alm, Eric J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-12, Vol.14 (12), p.e0223680
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Fecal Microbiota Transplant for Relapsing Clostridium difficile Infection Using a Frozen Inoculum From Unrelated Donors: A Randomized, Open-Label, Controlled Pilot Study
Author / Creator:Youngster, Ilan ; Sauk, Jenny ; Pindar, Christina ; Wilson, Robin G. ; Kaplan, Jess L. ; Smith, Mark B. ; Alm, Eric J. ; Gevers, Dirk ; Russell, George H. ; Hohmann, Elizabeth L.
Publisher:Oxford: OXFORD UNIVERSITY PRESS
Journal title:Clinical infectious diseases, 2014-06, Vol.58 (11), p.1515-1522
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ArticlesPeer ReviewedFull Text
Microbial Symbionts Accelerate Wound Healing via the Neuropeptide Hormone Oxytocin
Author / Creator:Poutahidis, Theofilos ; Kearney, Sean M. ; Levkovich, Tatiana ; Qi, Peimin ; Varian, Bernard J. ; Lakritz, Jessica R. ; Ibrahim, Yassin M. ; Chatzigiagkos, Antonis ; Alm, Eric J. ; Erdman, Susan E.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-10, Vol.8 (10), p.e78898
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ArticlesPeer ReviewedFull Text
SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases
Author / Creator:Wu, Fuqing ; Zhang, Jianbo ; Xiao, Amy ; Gu, Xiaoqiong ; Lee, Wei Lin ; Armas, Federica ; Kauffman, Kathryn ; Hanage, William ; Matus, Mariana ; Ghaeli, Newsha ; Endo, Noriko ; Duvallet, Claire ; Poyet, Mathilde ; Moniz, Katya ; Washburne, Alex D ; Erickson, Timothy B ; Chai, Peter R ; Thompson, Janelle ; Alm, Eric J
Publisher:1752 N St., N.W., Washington, DC: American Society for Microbiology
Journal title:mSystems, 2020-08, Vol.5 (4)
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ArticlesPeer ReviewedFull Text
Functional heterogeneity in the fermentation capabilities of the healthy human gut microbiota
Author / Creator:Gurry, Thomas ; Nguyen, Le Thanh Tu ; Yu, Xiaoqian ; Alm, Eric J.
Publisher:San Francisco: Public Library of Science
Journal title:PloS one, 2021-07, Vol.16 (7), p.e0254004
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ArticlesPeer ReviewedFull Text
Author Correction: X-Mapper: fast and accurate sequence alignment via gapped x-mers
Author / Creator:Gaston, Jeffry M. ; Alm, Eric J. ; Zhang, An-Ni
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2025-01, Vol.26 (1), p.16-1, Article 16
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ArticlesPeer ReviewedFull Text
Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning
Author / Creator:Cleary, Brian ; Brito, Ilana Lauren ; Huang, Katherine ; Gevers, Dirk ; Shea, Terrance ; Young, Sarah ; Alm, Eric J
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2015-10, Vol.33 (10), p.1053-1060
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Select record 34
ArticlesPeer ReviewedFull Text
Profiling Living Bacteria Informs Preparation of Fecal Microbiota Transplantations
Author / Creator:Chu, Nathaniel D. ; Smith, Mark B. ; Perrotta, Allison R. ; Kassam, Zain ; Alm, Eric J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-01, Vol.12 (1), p.e0170922-e0170922
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ArticlesPeer ReviewedFull Text
High resolution time series reveals cohesive but short-lived communities in coastal plankton
Author / Creator:Martin-Platero, Antonio M ; Cleary, Brian ; Kauffman, Kathryn ; Preheim, Sarah P ; McGillicuddy, Dennis J ; Alm, Eric J ; Polz, Martin F
Publisher:London: Nature Publishing Group
Journal title:Nature communications, 2018-01, Vol.9, p.1-11
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ArticlesPeer ReviewedFull Text
Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity
Author / Creator:Tian, Renmao ; Ning, Daliang ; He, Zhili ; Zhang, Ping ; Spencer, Sarah J. ; Gao, Shuhong ; Shi, Weiling ; Wu, Linwei ; Zhang, Ya ; Yang, Yunfeng ; Adams, Benjamin G. ; Rocha, Andrea M. ; Detienne, Brittny L. ; Lowe, Kenneth A. ; Joyner, Dominique C. ; Klingeman, Dawn M. ; Arkin, Adam P. ; Fields, Matthew W. ; Hazen, Terry C. ; Stahl, David A. ; Alm, Eric J. ; Zhou, Jizhong
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2020-04, Vol.8 (1), p.51-15, Article 51
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ArticlesPeer ReviewedFull Text
X-Mapper: fast and accurate sequence alignment via gapped x-mers
Author / Creator:Gaston, Jeffry M. ; Alm, Eric J. ; Zhang, An-Ni
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2025-01, Vol.26 (1), p.15-15, Article 15
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Probiotic Microbes Sustain Youthful Serum Testosterone Levels and Testicular Size in Aging Mice
Author / Creator:Poutahidis, Theofilos ; Springer, Alex ; Levkovich, Tatiana ; Qi, Peimin ; Varian, Bernard J. ; Lakritz, Jessica R. ; Ibrahim, Yassin M. ; Chatzigiagkos, Antonis ; Alm, Eric J. ; Erdman, Susan E.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-01, Vol.9 (1), p.e84877
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ArticlesPeer ReviewedFull Text
Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut
Author / Creator:Jiang, Xiaofang ; Hall, A. Brantley ; Arthur, Timothy D. ; Plichta, Damian R. ; Covington, Christian T. ; Poyet, Mathilde ; Crothers, Jessica ; Moses, Peter L. ; Tolonen, Andrew C. ; Vlamakis, Hera ; Alm, Eric J. ; Xavier, Ramnik J.
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2019-01, Vol.363 (6423), p.181-187
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Select record 40
ArticlesPeer ReviewedFull Text
Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity
Author / Creator:Fraser, Christophe ; Alm, Eric J ; Polz, Martin F ; Spratt, Brian G ; Hanage, William P
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2009-02, Vol.323 (5915), p.741-746
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Salt-responsive gut commensal modulates TH17 axis and disease

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Population Genomics of Early Events in the Ecological Differentiation of Bacteria

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Framework for rational donor selection in fecal microbiota transplant clinical trials

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Host lifestyle affects human microbiota on daily timescales

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Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

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Ecology drives a global network of gene exchange connecting the human microbiome

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Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools

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Fecal Microbiota Transplant for Relapsing Clostridium difficile Infection Using a Frozen Inoculum From Unrelated Donors: A Randomized, Open-Label, Controlled Pilot Study

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Microbial Symbionts Accelerate Wound Healing via the Neuropeptide Hormone Oxytocin

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SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases

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Functional heterogeneity in the fermentation capabilities of the healthy human gut microbiota

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Author Correction: X-Mapper: fast and accurate sequence alignment via gapped x-mers

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Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning

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Profiling Living Bacteria Informs Preparation of Fecal Microbiota Transplantations

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High resolution time series reveals cohesive but short-lived communities in coastal plankton

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Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

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X-Mapper: fast and accurate sequence alignment via gapped x-mers

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Probiotic Microbes Sustain Youthful Serum Testosterone Levels and Testicular Size in Aging Mice

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Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut

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Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

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