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302 results for Arkin,+Adam+P.

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Select record 21
ArticlesPeer ReviewedFull Text
Precise and reliable gene expression via standard transcription and translation initiation elements
Author / Creator:Mutalik, Vivek K ; Guimaraes, Joao C ; Cambray, Guillaume ; Lam, Colin ; Christoffersen, Marc Juul ; Mai, Quynh-Anh ; Tran, Andrew B ; Paull, Morgan ; Keasling, Jay D ; Arkin, Adam P ; Endy, Drew
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2013-04, Vol.10 (4), p.354-360
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Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation
Author / Creator:Zhang, Shuyan ; Ito, Masakazu ; Skerker, Jeffrey M. ; Arkin, Adam P. ; Rao, Christopher V.
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Applied microbiology and biotechnology, 2016-11, Vol.100 (21), p.9393-9405
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ArticlesPeer ReviewedFull Text
Composability of regulatory sequences controlling transcription and translation in Escherichia coli
Author / Creator:Kosuri, Sriram ; Goodman, Daniel B. ; Cambray, Guillaume ; Mutalik, Vivek K. ; Gao, Yuan ; Arkin, Adam P. ; Endy, Drew ; Church, George M.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-08, Vol.110 (34), p.14024-14029
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ArticlesPeer ReviewedFull Text
Quantifying the local adaptive landscape of a nascent bacterial community
Author / Creator:Ascensao, Joao A. ; Wetmore, Kelly M. ; Good, Benjamin H. ; Arkin, Adam P. ; Hallatschek, Oskar
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-01, Vol.14 (1), p.248-248, Article 248
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High-throughput mapping of the phage resistance landscape in E. coli
Author / Creator:Mutalik, Vivek K ; Adler, Benjamin A ; Rishi, Harneet S ; Piya, Denish ; Zhong, Crystal ; Koskella, Britt ; Kutter, Elizabeth M ; Calendar, Richard ; Novichkov, Pavel S ; Price, Morgan N ; Deutschbauer, Adam M ; Arkin, Adam P
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2020-10, Vol.18 (10), p.e3000877
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A method for achieving complete microbial genomes and improving bins from metagenomics data
Author / Creator:Lui, Lauren M ; Nielsen, Torben N ; Arkin, Adam P
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2021-05, Vol.17 (5), p.e1008972-e1008972
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Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity
Author / Creator:Tian, Renmao ; Ning, Daliang ; He, Zhili ; Zhang, Ping ; Spencer, Sarah J ; Gao, Shuhong ; Shi, Weiling ; Wu, Linwei ; Zhang, Ya ; Yang, Yunfeng ; Adams, Benjamin G ; Rocha, Andrea M ; Detienne, Brittny L ; Lowe, Kenneth A ; Joyner, Dominique C ; Klingeman, Dawn M ; Arkin, Adam P ; Fields, Matthew W ; Hazen, Terry C ; Stahl, David A ; Alm, Eric J ; Zhou, Jizhong
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2020-04, Vol.8 (1), p.51-15, Article 51
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ArticlesPeer ReviewedFull Text
The essential gene set of a photosynthetic organism
Author / Creator:Rubin, Benjamin E. ; Wetmore, Kelly M. ; Price, Morgan N. ; Diamond, Spencer ; Shultzaberger, Ryan K. ; Lowe, Laura C. ; Curtin, Genevieve ; Arkin, Adam P. ; Deutschbauer, Adam ; Golden, Susan S.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-12, Vol.112 (48), p.E6634-E6643
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ArticlesPeer ReviewedFull Text
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
Author / Creator:Lucks, Julius B ; Mortimer, Stefanie A ; Trapnell, Cole ; Luo, Shujun ; Aviran, Sharon ; Schroth, Gary P ; Pachter, Lior ; Doudna, Jennifer A ; Arkin, Adam P
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2011-07, Vol.108 (27), p.11063-11068
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Select record 30
ArticlesPeer ReviewedFull Text
Versatile RNA-sensing transcriptional regulators for engineering genetic networks
Author / Creator:Lucks, Julius B ; Qi, Lei ; Mutalik, Vivek K ; Wang, Denise ; Arkin, Adam P
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2011-05, Vol.108 (21), p.8617-8622
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Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae
Author / Creator:Kim, Soo Rin ; Skerker, Jeffrey M ; Kang, Wei ; Lesmana, Anastashia ; Wei, Na ; Arkin, Adam P ; Jin, Yong-Su
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-02, Vol.8 (2), p.e57048
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ArticlesPeer ReviewedFull Text
Evaluating E. coli genome‐scale metabolic model accuracy with high‐throughput mutant fitness data
Author / Creator:Bernstein, David B ; Akkas, Batu ; Price, Morgan N ; Arkin, Adam P
Publisher:England: EMBO Press
Journal title:Molecular systems biology, 2023-12, Vol.19 (12), p.e11566-n/a
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Select record 33
ArticlesPeer ReviewedFull Text
Sequestration‐based bistability enables tuning of the switching boundaries and design of a latch
Author / Creator:Chen, David ; Arkin, Adam P
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2012, Vol.8 (1), p.620-n/a
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Select record 34
ArticlesPeer ReviewedFull Text
Detailed simulations of cell biology with Smoldyn 2.1
Author / Creator:Andrews, Steven S ; Addy, Nathan J ; Brent, Roger ; Arkin, Adam P
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2010-03, Vol.6 (3), p.e1000705-e1000705
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Select record 35
ArticlesPeer ReviewedFull Text
PaperBLAST: Text Mining Papers for Information about Homologs
Author / Creator:Price, Morgan N ; Arkin, Adam P
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2017-07, Vol.2 (4)
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Select record 36
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Selective carbon sources influence the end products of microbial nitrate respiration
Author / Creator:Carlson, Hans K. ; Lui, Lauren M. ; Price, Morgan N. ; Kazakov, Alexey E. ; Carr, Alex V. ; Kuehl, Jennifer V. ; Owens, Trenton K. ; Nielsen, Torben ; Arkin, Adam P. ; Deutschbauer, Adam M.
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2020-08, Vol.14 (8), p.2034-2045
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Select record 37
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The selective pressures on the microbial community in a metal-contaminated aquifer
Author / Creator:Carlson, Hans K. ; Price, Morgan N. ; Callaghan, Mark ; Aaring, Alex ; Chakraborty, Romy ; Liu, Hualan ; Kuehl, Jennifer V. ; Arkin, Adam P. ; Deutschbauer, Adam M.
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2019-04, Vol.13 (4), p.937-949
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Select record 38
ArticlesPeer ReviewedFull Text
Four families of folate-independent methionine synthases
Author / Creator:Price, Morgan N ; Deutschbauer, Adam M ; Arkin, Adam P
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2021-02, Vol.17 (2), p.e1009342-e1009342
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ArticlesPeer ReviewedFull Text
Orthogonal control of expression mean and variance by epigenetic features at different genomic loci
Author / Creator:Dey, Siddharth S ; Foley, Jonathan E ; Limsirichai, Prajit ; Schaffer, David V ; Arkin, Adam P
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2015-05, Vol.11 (5), p.806-n/a
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ArticlesPeer ReviewedFull Text
Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics
Author / Creator:Price, Morgan N ; Zane, Grant M ; Kuehl, Jennifer V ; Melnyk, Ryan A ; Wall, Judy D ; Deutschbauer, Adam M ; Arkin, Adam P
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2018-01, Vol.14 (1), p.e1007147-e1007147
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Precise and reliable gene expression via standard transcription and translation initiation elements

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Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation

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Composability of regulatory sequences controlling transcription and translation in Escherichia coli

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Quantifying the local adaptive landscape of a nascent bacterial community

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High-throughput mapping of the phage resistance landscape in E. coli

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A method for achieving complete microbial genomes and improving bins from metagenomics data

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Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

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The essential gene set of a photosynthetic organism

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

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Versatile RNA-sensing transcriptional regulators for engineering genetic networks

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Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae

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Evaluating E. coli genome‐scale metabolic model accuracy with high‐throughput mutant fitness data

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Sequestration‐based bistability enables tuning of the switching boundaries and design of a latch

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Detailed simulations of cell biology with Smoldyn 2.1

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PaperBLAST: Text Mining Papers for Information about Homologs

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Selective carbon sources influence the end products of microbial nitrate respiration

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The selective pressures on the microbial community in a metal-contaminated aquifer

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Four families of folate-independent methionine synthases

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Orthogonal control of expression mean and variance by epigenetic features at different genomic loci

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Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

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