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ArticlesPeer ReviewedFull Text
Insight into Inhibitory Mechanism of PDE4D by Dietary Polyphenols Using Molecular Dynamics Simulations and Free Energy Calculations
Author / Creator:Furlan, Veronika ; Bren, Urban
Publisher:Switzerland: MDPI
Journal title:Biomolecules (Basel, Switzerland), 2021-03, Vol.11 (3), p.479
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ArticlesPeer ReviewedFull Text
Hop Compounds: Extraction Techniques, Chemical Analyses, Antioxidative, Antimicrobial, and Anticarcinogenic Effects
Author / Creator:Knez Hrnčič, Maša ; Španinger, Eva ; Košir, Iztok Jože ; Knez, Željko ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Nutrients, 2019-01, Vol.11 (2), p.257
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ArticlesPeer ReviewedFull Text
Helichrysum italicum: From Extraction, Distillation, and Encapsulation Techniques to Beneficial Health Effects
Author / Creator:Furlan, Veronika ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Foods, 2023-02, Vol.12 (4), p.802
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ArticlesPeer ReviewedFull Text
Naive Prediction of Protein Backbone Phi and Psi Dihedral Angles Using Deep Learning
Author / Creator:Broz, Matic ; Jukič, Marko ; Bren, Urban
Publisher:Basel: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2023-10, Vol.28 (20), p.7046
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ArticlesPeer ReviewedFull Text
Development of Fluorescence-Based Method for Dopamine Determination Using o-Phthaldialdehyde and 3-Mercaptopropyltriethoxysilane
Author / Creator:Sliesarenko, Valeriia ; Krstić, Marijana ; Bren, Urban ; Lobnik, Aleksandra
Publisher:Switzerland: MDPI AG
Journal title:Sensors (Basel, Switzerland), 2025-03, Vol.25 (6), p.1729
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ArticlesPeer ReviewedFull Text
Mechanistic Insights into Biological Activities of Polyphenolic Compounds from Rosemary Obtained by Inverse Molecular Docking
Author / Creator:Lešnik, Samo ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Foods, 2021-12, Vol.11 (1), p.67
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ArticlesPeer ReviewedFull Text
Potential Novel Thioether-Amide or Guanidine-Linker Class of SARS-CoV-2 Virus RNA-Dependent RNA Polymerase Inhibitors Identified by High-Throughput Virtual Screening Coupled to Free-Energy Calculation...
Author / Creator:Jukič, Marko ; Janežič, Dušanka ; Bren, Urban
Publisher:Basel: MDPI AG
Journal title:International journal of molecular sciences, 2021-10, Vol.22 (20), p.11143
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ArticlesPeer ReviewedFull Text
Nanomaterials and Their Recent Applications in Impedimetric Biosensing
Author / Creator:Štukovnik, Zala ; Fuchs-Godec, Regina ; Bren, Urban
Publisher:Basel: MDPI AG
Journal title:Biosensors (Basel), 2023-09, Vol.13 (10), p.899
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Novel Small-Molecule Inhibitors of the SARS-CoV-2 Spike Protein Binding to Neuropilin 1
Author / Creator:Kolarič, Anja ; Jukič, Marko ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Pharmaceuticals (Basel, Switzerland), 2022-01, Vol.15 (2), p.165
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ArticlesPeer ReviewedFull Text
Chemically inducible split protein regulators for mammalian cells
Author / Creator:Rihtar, Erik ; Lebar, Tina ; Lainšček, Duško ; Kores, Katarina ; Lešnik, Samo ; Bren, Urban ; Jerala, Roman
Publisher:New York: Nature Publishing Group US
Journal title:Nature chemical biology, 2023-01, Vol.19 (1), p.64-71
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Unveiling polyphenol-protein interactions: a comprehensive computational analysis
Author / Creator:Lešnik, Samo ; Jukić, Marko ; Bren, Urban
Publisher:Cham: Springer International Publishing
Journal title:Journal of cheminformatics, 2025-04, Vol.17 (1), p.50-21, Article 50
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ArticlesPeer ReviewedFull Text
The Effect of Growth Medium Strength on Minimum Inhibitory Concentrations of Tannins and Tannin Extracts against E. coli
Author / Creator:Štumpf, Sara ; Hostnik, Gregor ; Primožič, Mateja ; Leitgeb, Maja ; Salminen, Juha-Pekka ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2020-06, Vol.25 (12), p.2947
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ArticlesPeer ReviewedFull Text
Computational Analysis of S1PR1 SNPs Reveals Drug Binding Modes Relevant to Multiple Sclerosis Treatment
Author / Creator:Kores, Katarina ; Lešnik, Samo ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Pharmaceutics, 2024-11, Vol.16 (11), p.1413
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ArticlesPeer ReviewedFull Text
Mechanistic Insights into Side Effects of Troglitazone and Rosiglitazone Using a Novel Inverse Molecular Docking Protocol
Author / Creator:Kores, Katarina ; Konc, Janez ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Pharmaceutics, 2021-02, Vol.13 (3), p.315
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ArticlesPeer ReviewedFull Text
Inverse Molecular Docking Elucidating the Anticarcinogenic Potential of the Hop Natural Product Xanthohumol and Its Metabolites
Author / Creator:Kores, Katarina ; Kolenc, Zala ; Furlan, Veronika ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Foods, 2022-04, Vol.11 (9), p.1253
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ArticlesPeer ReviewedFull Text
Opioid Receptors and Protonation-Coupled Binding of Opioid Drugs
Author / Creator:Lešnik, Samo ; Bertalan, Éva ; Bren, Urban ; Bondar, Ana-Nicoleta
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2021-12, Vol.22 (24), p.13353
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Prioritisation of Compounds for 3CLpro Inhibitor Development on SARS-CoV-2 Variants
Author / Creator:Jukič, Marko ; Škrlj, Blaž ; Tomšič, Gašper ; Pleško, Sebastian ; Podlipnik, Črtomir ; Bren, Urban
Publisher:Basel: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2021-05, Vol.26 (10), p.3003
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ArticlesPeer ReviewedFull Text
Functionalization of Polyethylene (PE) and Polypropylene (PP) Material Using Chitosan Nanoparticles with Incorporated Resveratrol as Potential Active Packaging
Author / Creator:Glaser, Tjaša Kraševac ; Plohl, Olivija ; Vesel, Alenka ; Ajdnik, Urban ; Ulrih, Nataša Poklar ; Hrnčič, Maša Knez ; Bren, Urban ; Fras Zemljič, Lidija
Publisher:Switzerland: MDPI AG
Journal title:Materials, 2019-07, Vol.12 (13), p.2118
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ArticlesPeer ReviewedFull Text
Design of Tetra-Peptide Ligands of Antibody Fc Regions Using In Silico Combinatorial Library Screening
Author / Creator:Jukič, Marko ; Kralj, Sebastjan ; Kolarič, Anja ; Bren, Urban
Publisher:Basel: MDPI AG
Journal title:Pharmaceuticals (Basel, Switzerland), 2023-08, Vol.16 (8), p.1170
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ArticlesPeer ReviewedFull Text
QM-CSA: A Novel Quantum Mechanics-Based Protocol for Evaluation of the Carcinogen-Scavenging Activity of Polyphenolic Compounds
Author / Creator:Furlan, Veronika ; Tošović, Jelena ; Bren, Urban
Publisher:Switzerland: MDPI AG
Journal title:Foods, 2024-08, Vol.13 (17), p.2708
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Insight into Inhibitory Mechanism of PDE4D by Dietary Polyphenols Using Molecular Dynamics Simulations and Free Energy Calculations

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Hop Compounds: Extraction Techniques, Chemical Analyses, Antioxidative, Antimicrobial, and Anticarcinogenic Effects

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Helichrysum italicum: From Extraction, Distillation, and Encapsulation Techniques to Beneficial Health Effects

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Naive Prediction of Protein Backbone Phi and Psi Dihedral Angles Using Deep Learning

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Development of Fluorescence-Based Method for Dopamine Determination Using o-Phthaldialdehyde and 3-Mercaptopropyltriethoxysilane

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Mechanistic Insights into Biological Activities of Polyphenolic Compounds from Rosemary Obtained by Inverse Molecular Docking

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Potential Novel Thioether-Amide or Guanidine-Linker Class of SARS-CoV-2 Virus RNA-Dependent RNA Polymerase Inhibitors Identified by High-Throughput Virtual Screening Coupled to Free-Energy Calculation...

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Nanomaterials and Their Recent Applications in Impedimetric Biosensing

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Novel Small-Molecule Inhibitors of the SARS-CoV-2 Spike Protein Binding to Neuropilin 1

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Chemically inducible split protein regulators for mammalian cells

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Unveiling polyphenol-protein interactions: a comprehensive computational analysis

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The Effect of Growth Medium Strength on Minimum Inhibitory Concentrations of Tannins and Tannin Extracts against E. coli

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Computational Analysis of S1PR1 SNPs Reveals Drug Binding Modes Relevant to Multiple Sclerosis Treatment

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Mechanistic Insights into Side Effects of Troglitazone and Rosiglitazone Using a Novel Inverse Molecular Docking Protocol

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Inverse Molecular Docking Elucidating the Anticarcinogenic Potential of the Hop Natural Product Xanthohumol and Its Metabolites

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Opioid Receptors and Protonation-Coupled Binding of Opioid Drugs

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Prioritisation of Compounds for 3CLpro Inhibitor Development on SARS-CoV-2 Variants

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Functionalization of Polyethylene (PE) and Polypropylene (PP) Material Using Chitosan Nanoparticles with Incorporated Resveratrol as Potential Active Packaging

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Design of Tetra-Peptide Ligands of Antibody Fc Regions Using In Silico Combinatorial Library Screening

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QM-CSA: A Novel Quantum Mechanics-Based Protocol for Evaluation of the Carcinogen-Scavenging Activity of Polyphenolic Compounds

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