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Select record 21
ArticlesPeer ReviewedFull Text
Statistical Power Analysis for Designing Bulk, Single-Cell, and Spatial Transcriptomics Experiments: Review, Tutorial, and Perspectives
Author / Creator:Jeon, Hyeongseon ; Xie, Juan ; Jeon, Yeseul ; Jung, Kyeong Joo ; Gupta, Arkobrato ; Chang, Won ; Chung, Dongjun
Publisher:Switzerland: MDPI AG
Journal title:Biomolecules (Basel, Switzerland), 2023-01, Vol.13 (2), p.221
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A Statistical Framework for the Analysis of ChIP-Seq Data
Author / Creator:Kuan, Pei Fen ; Chung, Dongjun ; Pan, Guangjin ; Thomson, James A. ; Stewart, Ron ; Keleş, Sündüz
Publisher:Alexandria, VA: American Statistical Association
Journal title:Journal of the American Statistical Association, 2011-09, Vol.106 (495), p.891-903
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Treatment with soluble CD24 attenuates COVID-19-associated systemic immunopathology
Author / Creator:Song, No-Joon ; Allen, Carter ; Vilgelm, Anna E ; Riesenberg, Brian P ; Weller, Kevin P ; Reynolds, Kelsi ; Chakravarthy, Karthik B ; Kumar, Amrendra ; Khatiwada, Aastha ; Sun, Zequn ; Ma, Anjun ; Chang, Yuzhou ; Yusuf, Mohamed ; Li, Anqi ; Zeng, Cong ; Evans, John P ; Bucci, Donna ; Gunasena, Manuja ; Xu, Menglin ; Liyanage, Namal P M ; Bolyard, Chelsea ; Velegraki, Maria ; Liu, Shan-Lu ; Ma, Qin ; Devenport, Martin ; Liu, Yang ; Zheng, Pan ; Malvestutto, Carlos D ; Chung, Dongjun ; Li, Zihai
Publisher:England: BioMed Central Ltd
Journal title:Journal of hematology and oncology, 2022-01, Vol.15 (1), p.5-5, Article 5
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GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature
Author / Creator:Couch, Daniel ; Yu, Zhenning ; Nam, Jin Hyun ; Allen, Carter ; Ramos, Paula S ; da Silveira, Willian A ; Hunt, Kelly J ; Hazard, Edward S ; Hardiman, Gary ; Lawson, Andrew ; Chung, Dongjun
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-07, Vol.14 (7), p.e0219195-e0219195
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Differential immune signatures in the tumor microenvironment are associated with colon cancer racial disparities
Author / Creator:Curran, Thomas ; Sun, Zequn ; Gerry, Brielle ; Findlay, Victoria J. ; Wallace, Kristin ; Li, Zihai ; Paulos, Chrystal ; Ford, Marvella ; Rubinstein, Mark P. ; Chung, Dongjun ; Camp, E. Ramsay
Publisher:United States: John Wiley & Sons, Inc
Journal title:Cancer medicine (Malden, MA), 2021-03, Vol.10 (5), p.1805-1814
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Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data
Author / Creator:Chung, Dongjun ; Kuan, Pei Fen ; Li, Bo ; Sanalkumar, Rajendran ; Liang, Kun ; Bresnick, Emery H ; Dewey, Colin ; Keleş, Sündüz
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2011-07, Vol.7 (7), p.e1002111-e1002111
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Selective targeting of GARP-LTGFβ axis in the tumor microenvironment augments PD-1 blockade via enhancing CD8+ T cell antitumor immunity
Author / Creator:Li, Anqi ; Chang, Yuzhou ; Song, No-Joon ; Wu, Xingjun ; Chung, Dongjun ; Riesenberg, Brian P ; Velegraki, Maria ; Giuliani, Giuseppe D ; Das, Komal ; Okimoto, Tamio ; Kwon, Hyunwoo ; Chakravarthy, Karthik B ; Bolyard, Chelsea ; Wang, Yi ; He, Kai ; Gatti-Mays, Margaret ; Das, Jayajit ; Yang, Yiping ; Gewirth, Daniel T ; Ma, Qin ; Carbone, David ; Li, Zihai
Publisher:England: BMJ Publishing Group Ltd
Journal title:Journal for immunotherapy of cancer, 2022-09, Vol.10 (9), p.e005433
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ShinyGPA: An interactive visualization toolkit for investigating pleiotropic architecture using GWAS datasets
Author / Creator:Kortemeier, Emma ; Ramos, Paula S ; Hunt, Kelly J ; Kim, Hang J ; Hardiman, Gary ; Chung, Dongjun
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-01, Vol.13 (1), p.e0190949-e0190949
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ArticlesPeer ReviewedFull Text
mRNA vaccines against SARS-CoV-2 induce divergent antigen-specific T-cell responses in patients with lung cancer
Author / Creator:Song, No-Joon ; Chakravarthy, Karthik B ; Jeon, Hyeongseon ; Bolyard, Chelsea ; Reynolds, Kelsi ; Weller, Kevin P ; Reisinger, Sarah ; Wang, Yi ; Li, Anqi ; Jiang, Sizun ; Ma, Qin ; Barouch, Dan H ; Rubinstein, Mark P ; Shields, Peter G ; Oltz, Eugene M ; Chung, Dongjun ; Li, Zihai
Publisher:England: BMJ Publishing Group Ltd
Journal title:Journal for immunotherapy of cancer, 2024-01, Vol.12 (1), p.e007922
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ArticlesPeer ReviewedFull Text
dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data
Author / Creator:Chung, Dongjun ; Park, Dan ; Myers, Kevin ; Grass, Jeffrey ; Kiley, Patricia ; Landick, Robert ; Keleş, Sündüz
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2013-10, Vol.9 (10), p.e1003246-e1003246
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ArticlesPeer ReviewedFull Text
Induced Torpor as a Countermeasure for Low Dose Radiation Exposure in a Zebrafish Model
Author / Creator:Cahill, Thomas ; da Silveira, Willian Abraham ; Renaud, Ludivine ; Williamson, Tucker ; Wang, Hao ; Chung, Dongjun ; Overton, Ian ; Chan, Sherine S L ; Hardiman, Gary
Publisher:Switzerland: MDPI AG
Journal title:Cells (Basel, Switzerland), 2021-04, Vol.10 (4), p.906
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ArticlesPeer ReviewedFull Text
Relationships between GAT1 and PTSD, Depression, and Substance Use Disorder
Author / Creator:Bountress, Kaitlin E ; Wei, Wei ; Sheerin, Christina ; Chung, Dongjun ; Amstadter, Ananda B ; Mandel, Howard ; Wang, Zhewu
Publisher:Switzerland: MDPI AG
Journal title:Brain sciences, 2017-01, Vol.7 (1), p.6-6
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ArticlesPeer ReviewedFull Text
GPA-MDS: A Visualization Approach to Investigate Genetic Architecture among Phenotypes Using GWAS Results
Author / Creator:Hardiman, Gary ; Wolf, Bethany J. ; Hunt, Kelly J. ; Ramos, Paula S. ; Wei, Wei ; Chung, Dongjun
Publisher:Cairo, Egypt: Hindawi Publishing Corporation
Journal title:International journal of genomics, 2016-01, Vol.2016 (2016), p.1-6
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ArticlesPeer ReviewedFull Text
The LZIP: A Bayesian Latent Factor Model for Correlated Zero-Inflated Counts
Author / Creator:Neelon, Brian ; Chung, Dongjun
Publisher:United States: Wiley-Blackwell
Journal title:Biometrics, 2017-03, Vol.73 (1), p.185-196
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Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data
Author / Creator:Liu, Zhaoqian ; Wang, Qi ; Ma, Anjun ; Feng, Shaohong ; Chung, Dongjun ; Zhao, Jing ; Ma, Qin ; Liu, Bingqiang
Publisher:Oxford: Elsevier Ltd
Journal title:Computers in biology and medicine, 2023-10, Vol.165, p.107458-107458, Article 107458
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ArticlesPeer ReviewedFull Text
A Bayesian multivariate mixture model for high throughput spatial transcriptomics
Author / Creator:Allen, Carter ; Chang, Yuzhou ; Neelon, Brian ; Chang, Won ; Kim, Hang J ; Li, Zihai ; Ma, Qin ; Chung, Dongjun
Publisher:United States: Blackwell Publishing Ltd
Journal title:Biometrics, 2023-09, Vol.79 (3), p.1775-1787
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OGT suppresses S6K1-mediated macrophage inflammation and metabolic disturbance
Author / Creator:Yang, Yunfan ; Li, Xiruo ; Luan, Harding H. ; Zhang, Bichen ; Zhang, Kaisi ; Nam, Jin Hyun ; Li, Zongyu ; Fu, Minnie ; Munk, Alexander ; Zhang, Dongyan ; Wang, Simeng ; Liu, Yuyang ; Albuquerque, João Paulo ; Ong, Qunxiang ; Li, Rui ; Wang, Qi ; Robert, Marie E. ; Perry, Rachel J. ; Chung, Dongjun ; Shulman, Gerald I. ; Yang, Xiaoyong
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2020-07, Vol.117 (28), p.16616-16625
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Sex as a predictor of response to cancer immunotherapy
Author / Creator:Kwon, Hyunwoo ; Lin, Ching Ying ; Chung, Dongjun ; Li, Xue ; Li, Zihai
Publisher:England: Elsevier Ltd
Journal title:The lancet oncology, 2018-08, Vol.19 (8), p.e379-e379
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ArticlesPeer ReviewedFull Text
Evidence of Social Contextual Effects on Adolescent Smoking in South Korea
Author / Creator:Jung, Minsoo ; Chung, Dongjun
Publisher:Los Angeles, CA: SAGE Publications
Journal title:Asia-Pacific journal of public health, 2013-05, Vol.25 (3), p.260-270
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Novelty-induced locomotor behavior predicts heroin addiction vulnerability in male, but not female, rats
Author / Creator:Kuhn, Brittany N. ; Cannella, Nazzareno ; Crow, Ayteria D. ; Roberts, Analyse T. ; Lunerti, Veronica ; Allen, Carter ; Nall, Rusty W. ; Hardiman, Gary ; Woods, Leah C. Solberg ; Chung, Dongjun ; Ciccocioppo, Roberto ; Kalivas, Peter W.
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Psychopharmacology, 2022-11, Vol.239 (11), p.3605-3620
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Statistical Power Analysis for Designing Bulk, Single-Cell, and Spatial Transcriptomics Experiments: Review, Tutorial, and Perspectives

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A Statistical Framework for the Analysis of ChIP-Seq Data

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Treatment with soluble CD24 attenuates COVID-19-associated systemic immunopathology

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GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature

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Differential immune signatures in the tumor microenvironment are associated with colon cancer racial disparities

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Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data

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Selective targeting of GARP-LTGFβ axis in the tumor microenvironment augments PD-1 blockade via enhancing CD8+ T cell antitumor immunity

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ShinyGPA: An interactive visualization toolkit for investigating pleiotropic architecture using GWAS datasets

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mRNA vaccines against SARS-CoV-2 induce divergent antigen-specific T-cell responses in patients with lung cancer

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dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data

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Induced Torpor as a Countermeasure for Low Dose Radiation Exposure in a Zebrafish Model

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Relationships between GAT1 and PTSD, Depression, and Substance Use Disorder

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GPA-MDS: A Visualization Approach to Investigate Genetic Architecture among Phenotypes Using GWAS Results

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The LZIP: A Bayesian Latent Factor Model for Correlated Zero-Inflated Counts

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Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data

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A Bayesian multivariate mixture model for high throughput spatial transcriptomics

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OGT suppresses S6K1-mediated macrophage inflammation and metabolic disturbance

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Sex as a predictor of response to cancer immunotherapy

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Evidence of Social Contextual Effects on Adolescent Smoking in South Korea

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Novelty-induced locomotor behavior predicts heroin addiction vulnerability in male, but not female, rats

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