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105 results for Lercher,+Martin+J.

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Select record 21
ArticlesPeer ReviewedFull Text
A multimodal Transformer Network for protein-small molecule interactions enhances predictions of kinase inhibition and enzyme-substrate relationships
Author / Creator:Kroll, Alexander ; Ranjan, Sahasra ; Lercher, Martin J.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2024-05, Vol.20 (5), p.e1012100
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Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth
Author / Creator:Dourado, Hugo ; Liebermeister, Wolfram ; Ebenhöh, Oliver ; Lercher, Martin J.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2023-06, Vol.19 (6), p.e1011156
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ArticlesPeer ReviewedFull Text
Energy efficiency trade-offs drive nucleotide usage in transcribed regions
Author / Creator:Chen, Wei-Hua ; Lu, Guanting ; Bork, Peer ; Hu, Songnian ; Lercher, Martin J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-04, Vol.7 (1), p.11334-10, Article 11334
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ArticlesPeer ReviewedFull Text
Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal
Author / Creator:Fritzemeier, Claus Jonathan ; Hartleb, Daniel ; Szappanos, Balázs ; Papp, Balázs ; Lercher, Martin J.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2017-04, Vol.13 (4), p.e1005494
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ArticlesPeer ReviewedFull Text
Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote
Author / Creator:Schönknecht, Gerald ; Chen, Wei-Hua ; Ternes, Chad M. ; Barbier, Guillaume G. ; Shrestha, Roshan P. ; Stanke, Mario ; Bräutigam, Andrea ; Baker, Brett J. ; Banfield, Jillian F. ; Garavito, R. Michael ; Carr, Kevin ; Wilkerson, Curtis ; Rensing, Stefan A. ; Gagneul, David ; Dickenson, Nicholas E. ; Oesterhelt, Christine ; Lercher, Martin J. ; Weber, Andreas P. M.
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2013-03, Vol.339 (6124), p.1207-1210
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ArticlesPeer ReviewedFull Text
Minimal regulatory spaces in yeast genomes
Author / Creator:Chen, Wei-Hua ; Wei, Wu ; Lercher, Martin J
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2011-06, Vol.12 (1), p.320-320, Article 320
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Growth‐mediated negative feedback shapes quantitative antibiotic response
Author / Creator:Angermayr, S Andreas ; Pang, Tin Yau ; Chevereau, Guillaume ; Mitosch, Karin ; Lercher, Martin J ; Bollenbach, Tobias
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2022-09, Vol.18 (9), p.e10490-n/a
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Modeling photosynthetic resource allocation connects physiology with evolutionary environments
Author / Creator:Sundermann, Esther M. ; Lercher, Martin J. ; Heckmann, David
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-08, Vol.11 (1), p.15979-15, Article 15979
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The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria
Author / Creator:Mallmann, Julia ; Heckmann, David ; Bräutigam, Andrea ; Lercher, Martin J ; Weber, Andreas PM ; Westhoff, Peter ; Gowik, Udo
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2014-06, Vol.3, p.e02478
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Flux balance analysis with or without molecular crowding fails to predict two thirds of experimentally observed epistasis in yeast
Author / Creator:Alzoubi, Deya ; Desouki, Abdelmoneim Amer ; Lercher, Martin J.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-08, Vol.9 (1), p.11837-9, Article 11837
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Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
Author / Creator:Pál, Csaba ; Papp, Balázs ; Lercher, Martin J
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2005-12, Vol.37 (12), p.1372-1375
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Select record 32
ArticlesPeer ReviewedFull Text
mRNA Blueprint for C₄ Photosynthesis Derived from Comparative Transcriptomics of Closely Related C₃ and C₄ Species
Author / Creator:Bräutigam, Andrea ; Kajala, Kaisa ; Wullenweber, Julia ; Sommer, Manuel ; Gagneul, David ; Weber, Katrin L ; Carr, Kevin M ; Gowik, Udo ; Mass, Janina ; Lercher, Martin J ; Westhoff, Peter ; Hibberd, Julian M ; Weber, Andreas P.M
Publisher:United States: American Society of Plant Biologists
Journal title:Plant physiology (Bethesda), 2011, Vol.155 (1), p.142-156
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ArticlesPeer ReviewedFull Text
Prediction of effective genome size in metagenomic samples
Author / Creator:Raes, Jeroen ; Korbel, Jan O ; Lercher, Martin J ; von Mering, Christian ; Bork, Peer
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2007-01, Vol.8 (1), p.R10-1492, Article R10
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ArticlesPeer ReviewedFull Text
Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets
Author / Creator:Hartleb, Daniel ; Jarre, Florian ; Lercher, Martin J.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2016-08, Vol.12 (8), p.e1005036-e1005036
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ArticlesPeer ReviewedFull Text
Plant and Animal Glycolate Oxidases Have a Common Eukaryotic Ancestor and Convergently Duplicated to Evolve Long-Chain 2-Hydroxy Acid Oxidases
Author / Creator:Esser, Christian ; Kuhn, Anke ; Groth, Georg ; Lercher, Martin J ; Maurino, Veronica G
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2014-05, Vol.31 (5), p.1089-1101
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Adaptive evolution of complex innovations through stepwise metabolic niche expansion
Author / Creator:Szappanos, Balázs ; Fritzemeier, Jonathan ; Csörgő, Bálint ; Lázár, Viktória ; Lu, Xiaowen ; Fekete, Gergely ; Bálint, Balázs ; Herczeg, Róbert ; Nagy, István ; Notebaart, Richard A. ; Lercher, Martin J. ; Pál, Csaba ; Papp, Balázs
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-05, Vol.7 (1), p.11607-10, Article 11607
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Select record 37
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Proteome efficiency of metabolic pathways in Escherichia coli increases along the nutrient flow
Author / Creator:Hu, Xiao-Pan ; Schroeder, Stefan ; Lercher, Martin J.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2023-10, Vol.8 (5), p.e0076023
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Select record 38
ArticlesPeer ReviewedFull Text
Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes
Author / Creator:Schrimpf, Sabine P ; Weiss, Manuel ; Reiter, Lukas ; Ahrens, Christian H ; Jovanovic, Marko ; Malmström, Johan ; Brunner, Erich ; Mohanty, Sonali ; Lercher, Martin J ; Hunziker, Peter E ; Aebersold, Ruedi ; von Mering, Christian ; Hengartner, Michael O
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2009-03, Vol.7 (3), p.e1000048-e1000048
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ArticlesPeer ReviewedFull Text
Chance and necessity in the evolution of minimal metabolic networks
Author / Creator:Pál, Csaba ; Papp, Balázs ; Lercher, Martin J. ; Csermely, Péter ; Oliver, Stephen G. ; Hurst, Laurence D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature, 2006-03, Vol.440 (7084), p.667-670
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Select record 40
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Evidence for Widespread Degradation of Gene Control Regions in Hominid Genomes
Author / Creator:Keightley, Peter D ; Lercher, Martin J ; Eyre-Walker, Adam
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2005-02, Vol.3 (2), p.e42
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A multimodal Transformer Network for protein-small molecule interactions enhances predictions of kinase inhibition and enzyme-substrate relationships

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Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth

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Energy efficiency trade-offs drive nucleotide usage in transcribed regions

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Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal

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Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote

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Minimal regulatory spaces in yeast genomes

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Growth‐mediated negative feedback shapes quantitative antibiotic response

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Modeling photosynthetic resource allocation connects physiology with evolutionary environments

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The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria

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Flux balance analysis with or without molecular crowding fails to predict two thirds of experimentally observed epistasis in yeast

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Adaptive evolution of bacterial metabolic networks by horizontal gene transfer

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mRNA Blueprint for C₄ Photosynthesis Derived from Comparative Transcriptomics of Closely Related C₃ and C₄ Species

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Prediction of effective genome size in metagenomic samples

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Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets

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Plant and Animal Glycolate Oxidases Have a Common Eukaryotic Ancestor and Convergently Duplicated to Evolve Long-Chain 2-Hydroxy Acid Oxidases

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Adaptive evolution of complex innovations through stepwise metabolic niche expansion

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Proteome efficiency of metabolic pathways in Escherichia coli increases along the nutrient flow

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Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes

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Chance and necessity in the evolution of minimal metabolic networks

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Evidence for Widespread Degradation of Gene Control Regions in Hominid Genomes

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