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ArticlesPeer ReviewedFull Text
A Consensus Genetic Map of Cowpea [Vigna unguiculata (L) Walp.] and Synteny Based on EST-Derived SNPs
Author / Creator:Muchero, Wellington ; Diop, Ndeye N. ; Bhat, Prasanna R. ; Fenton, Raymond D. ; Wanamaker, Steve ; Pottorff, Marti ; Hearne, Sarah ; Cisse, Ndiaga ; Fatokun, Christian ; Ehlers, Jeffrey D. ; Roberts, Philip A. ; Close, Timothy J.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2009-10, Vol.106 (43), p.18159-18164
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ArticlesPeer ReviewedFull Text
Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies
Author / Creator:Drillon, Guénola ; Champeimont, Raphaël ; Oteri, Francesco ; Fischer, Gilles ; Carbone, Alessandra
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2020-09, Vol.37 (9), p.2747-2762
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ArticlesPeer ReviewedFull Text
SynGAP: a synteny-based toolkit for gene structure annotation polishing
Author / Creator:Wu, Fengqi ; Mai, Yingxiao ; Chen, Chengjie ; Xia, Rui
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-08, Vol.25 (1), p.218-218, Article 218
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OrthoRefine: automated enhancement of prior ortholog identification via synteny
Author / Creator:Ludwig, J ; Mrázek, J
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2024-04, Vol.25 (1), p.163-163, Article 163
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Jumbled Genomes: Missing Apicomplexan Synteny
Author / Creator:DeBarry, Jeremy D ; Kissinger, Jessica C
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2011-10, Vol.28 (10), p.2855-2871
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Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes
Author / Creator:Vakirlis, Nikolaos ; Carvunis, Anne-Ruxandra ; McLysaght, Aoife
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2020-02, Vol.9
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ArticlesPeer ReviewedFull Text
Orthology detection combining clustering and synteny for very large datasets
Author / Creator:Lechner, Marcus ; Hernandez-Rosales, Maribel ; Doerr, Daniel ; Wieseke, Nicolas ; Thévenin, Annelyse ; Stoye, Jens ; Hartmann, Roland K ; Prohaska, Sonja J ; Stadler, Peter F
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-08, Vol.9 (8), p.e105015-e105015
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ArticlesPeer ReviewedFull Text
POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes
Author / Creator:Siddiqui, Mustafa ; Conant, Gavin C
Publisher:London: BioMed Central Ltd
Journal title:BMC bioinformatics, 2023-04, Vol.24 (1), p.1-174, Article 174
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Synima: a Synteny imaging tool for annotated genome assemblies
Author / Creator:Farrer, Rhys A
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2017-11, Vol.18 (1), p.507-507, Article 507
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ArticlesPeer ReviewedFull Text
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes
Author / Creator:Moore, Matthew P ; Laager, Mirjam ; Ribeca, Paolo ; Didelot, Xavier
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2024-04, Vol.20 (4), p.e1011184-e1011184
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ArticlesPeer ReviewedFull Text
Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny
Author / Creator:Kobayashi, Yuuki ; Kayamori, Ayane ; Aoki, Keita ; Shiwa, Yuh ; Matsutani, Minenosuke ; Fujita, Nobuyuki ; Sugita, Takashi ; Iwasaki, Wataru ; Tanaka, Naoto ; Takashima, Masako
Publisher:London: BioMed Central Ltd
Journal title:BMC genomics, 2023-10, Vol.24 (1), p.1-609, Article 609
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ArticlesPeer ReviewedFull Text
The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei
Author / Creator:Rondeau, Eric B ; Minkley, David R ; Leong, Jong S ; Messmer, Amber M ; Jantzen, Johanna R ; von Schalburg, Kristian R ; Lemon, Craig ; Bird, Nathan H ; Koop, Ben F
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-07, Vol.9 (7), p.e102089-e102089
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ArticlesPeer ReviewedFull Text
High-quality haploid genomes corroborate 29 chromosomes and highly conserved synteny of genes in Hyles hawkmoths (Lepidoptera: Sphingidae)
Author / Creator:Hundsdoerfer, Anna K ; Schell, Tilman ; Patzold, Franziska ; Wright, Charlotte J ; Yoshido, Atsuo ; Marec, František ; Daneck, Hana ; Winkler, Sylke ; Greve, Carola ; Podsiadlowski, Lars ; Hiller, Michael ; Pippel, Martin
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2023-08, Vol.24 (1), p.443-21, Article 443
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Select record 34
Reference EntriesFull Text
synteny
Publisher:Oxford University Press
Journal title:A Dictionary of Biology, 2016
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Select record 35
ArticlesPeer ReviewedFull Text
The JAX Synteny Browser for mouse-human comparative genomics
Author / Creator:Kolishovski, Georgi ; Lamoureux, Anna ; Hale, Paul ; Richardson, Joel E. ; Recla, Jill M. ; Adesanya, Omoluyi ; Simons, Al ; Kunde-Ramamoorthy, Govindarajan ; Bult, Carol J.
Publisher:New York: Springer US
Journal title:Mammalian genome, 2019-12, Vol.30 (11-12), p.353-361
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ArticlesPeer ReviewedFull Text
fagin: synteny-based phylostratigraphy and finer classification of young genes
Author / Creator:Arendsee, Zebulun ; Li, Jing ; Singh, Urminder ; Bhandary, Priyanka ; Seetharam, Arun ; Wurtele, Eve Syrkin
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-08, Vol.20 (1), p.440-14, Article 440
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Select record 37
ArticlesPeer ReviewedFull Text
Identification of putative QTLs for seedling stage phosphorus starvation response in finger millet (Eleusine coracana L. Gaertn.) by association mapping and cross species synteny analysis
Author / Creator:Ramakrishnan, M ; Ceasar, S Antony ; Vinod, K K ; Duraipandiyan, V ; Ajeesh Krishna, T P ; Upadhyaya, Hari D ; Al-Dhabi, N A ; Ignacimuthu, S
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-08, Vol.12 (8), p.e0183261-e0183261
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ArticlesPeer ReviewedFull Text
Deciphering Plant NLR Genomic Evolution: Synteny-Informed Classification Unveils Insights into TNL Gene Loss
Author / Creator:Guo, Bo-Cheng ; Zhang, Yi-Rong ; Liu, Zhi-Guang ; Li, Xin-Chu ; Yu, Ze ; Ping, Bo-Ya ; Sun, Ya-Qiang ; van den Burg, Harrold ; Ma, Feng-Wang ; Zhao, Tao
Publisher:United States: Oxford University Press
Journal title:Molecular biology and evolution, 2025-02, Vol.42 (2)
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ArticlesPeer ReviewedFull Text
Screening synteny blocks in pairwise genome comparisons through integer programming
Author / Creator:Tang, Haibao ; Lyons, Eric ; Pedersen, Brent ; Schnable, James C ; Paterson, Andrew H ; Freeling, Michael
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-04, Vol.12 (1), p.102-102, Article 102
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Select record 40
ArticlesPeer ReviewedFull Text
Chromosome map of the Siamese cobra: did partial synteny of sex chromosomes in the amniote represent "a hypothetical ancestral super-sex chromosome" or random distribution?
Author / Creator:Singchat, Worapong ; O'Connor, Rebecca E ; Tawichasri, Panupong ; Suntronpong, Aorarat ; Sillapaprayoon, Siwapech ; Suntrarachun, Sunutcha ; Muangmai, Narongrit ; Baicharoen, Sudarath ; Peyachoknagul, Surin ; Chanhome, Lawan ; Griffin, Darren ; Srikulnath, Kornsorn
Publisher:England: BioMed Central
Journal title:BMC genomics, 2018-12, Vol.19 (1), p.939-939, Article 939
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A Consensus Genetic Map of Cowpea [Vigna unguiculata (L) Walp.] and Synteny Based on EST-Derived SNPs

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Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies

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SynGAP: a synteny-based toolkit for gene structure annotation polishing

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OrthoRefine: automated enhancement of prior ortholog identification via synteny

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Jumbled Genomes: Missing Apicomplexan Synteny

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Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes

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Orthology detection combining clustering and synteny for very large datasets

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POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes

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Synima: a Synteny imaging tool for annotated genome assemblies

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KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes

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Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny

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The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei

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High-quality haploid genomes corroborate 29 chromosomes and highly conserved synteny of genes in Hyles hawkmoths (Lepidoptera: Sphingidae)

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synteny

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The JAX Synteny Browser for mouse-human comparative genomics

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fagin: synteny-based phylostratigraphy and finer classification of young genes

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Identification of putative QTLs for seedling stage phosphorus starvation response in finger millet (Eleusine coracana L. Gaertn.) by association mapping and cross species synteny analysis

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Deciphering Plant NLR Genomic Evolution: Synteny-Informed Classification Unveils Insights into TNL Gene Loss

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Screening synteny blocks in pairwise genome comparisons through integer programming

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Chromosome map of the Siamese cobra: did partial synteny of sex chromosomes in the amniote represent "a hypothetical ancestral super-sex chromosome" or random distribution?

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