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46 results for Yurkovich,+James+T.

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Select record 21
ArticlesPeer ReviewedFull Text
Temperature Dependence of Platelet Metabolism
Author / Creator:Jóhannsson, Freyr ; Yurkovich, James T. ; Guðmundsson, Steinn ; Sigurjónsson, Ólafur E. ; Rolfsson, Óttar
Publisher:Switzerland: MDPI AG
Journal title:Metabolites, 2024-01, Vol.14 (2), p.91
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ArticlesPeer ReviewedFull Text
Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells
Author / Creator:Yurkovich, James T. ; Yang, Laurence ; Palsson, Bernhard O.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2017-03, Vol.13 (3), p.e1005424
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ArticlesPeer ReviewedFull Text
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data
Author / Creator:Yang, Laurence ; Tan, Justin ; O’Brien, Edward J. ; Monk, Jonathan M. ; Kim, Donghyuk ; Li, Howard J. ; Charusanti, Pep ; Ebrahim, Ali ; Lloyd, Colton J. ; Yurkovich, James T. ; Du, Bin ; Dräger, Andreas ; Thomas, Alex ; Sun, Yuekai ; Saunders, Michael A. ; Palsson, Bernhard O.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-08, Vol.112 (34), p.10810-10815
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ArticlesPeer ReviewedFull Text
Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials
Author / Creator:Yurkovich, James T. ; Alcantar, Miguel A. ; Haiman, Zachary B. ; Palsson, Bernhard O.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2018-08, Vol.14 (8), p.e1006356
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Metabolic and Transcriptional Changes across Osteogenic Differentiation of Mesenchymal Stromal Cells
Author / Creator:Sigmarsdottir, Thora Bjorg ; McGarrity, Sarah ; de Lomana, Adrián López García ; Kotronoulas, Aristotelis ; Sigurdsson, Snaevar ; Yurkovich, James T. ; Rolfsson, Ottar ; Sigurjonsson, Olafur Eysteinn
Publisher:Switzerland: MDPI AG
Journal title:Bioengineering (Basel), 2021-12, Vol.8 (12), p.208
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ArticlesPeer ReviewedFull Text
Blood Is a Window into Health and Disease
Author / Creator:Yurkovich, James T ; Hood, Leroy
Publisher:England: Oxford University Press
Journal title:Clinical chemistry (Baltimore, Md.), 2019-10, Vol.65 (10), p.1204-1206
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ArticlesPeer ReviewedFull Text
A systems approach to clinical oncology uses deep phenotyping to deliver personalized care
Author / Creator:Yurkovich, James T. ; Tian, Qiang ; Price, Nathan D. ; Hood, Leroy
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Clinical oncology, 2020-03, Vol.17 (3), p.183-194
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The transition from genomics to phenomics in personalized population health
Author / Creator:Yurkovich, James T. ; Evans, Simon J. ; Rappaport, Noa ; Boore, Jeffrey L. ; Lovejoy, Jennifer C. ; Price, Nathan D. ; Hood, Leroy E.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2024-04, Vol.25 (4), p.286-302
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ArticlesPeer ReviewedFull Text
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities
Author / Creator:Fang, Xin ; Sastry, Anand ; Mih, Nathan ; Kim, Donghyuk ; Tan, Justin ; Yurkovich, James T. ; Lloyd, Colton J. ; Gao, Ye ; Yang, Laurence ; Palsson, Bernhard O.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2017-09, Vol.114 (38), p.10286-10291
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Gut microbiome pattern reflects healthy ageing and predicts survival in humans
Author / Creator:Wilmanski, Tomasz ; Diener, Christian ; Rappaport, Noa ; Patwardhan, Sushmita ; Wiedrick, Jack ; Lapidus, Jodi ; Earls, John C. ; Zimmer, Anat ; Glusman, Gustavo ; Robinson, Max ; Yurkovich, James T. ; Kado, Deborah M. ; Cauley, Jane A. ; Zmuda, Joseph ; Lane, Nancy E. ; Magis, Andrew T. ; Lovejoy, Jennifer C. ; Hood, Leroy ; Gibbons, Sean M. ; Orwoll, Eric S. ; Price, Nathan D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature metabolism, 2021-02, Vol.3 (2), p.274-286
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ArticlesPeer ReviewedFull Text
Cellular responses to reactive oxygen species are predicted from molecular mechanisms
Author / Creator:Yang, Laurence ; Mih, Nathan ; Anand, Amitesh ; Park, Joon Ho ; Tan, Justin ; Yurkovich, James T. ; Monk, Jonathan M. ; Lloyd, Colton J. ; Sandberg, Troy E. ; Seo, Sang Woo ; Kim, Donghyuk ; Sastry, Anand V. ; Phaneuf, Patrick ; Gao, Ye ; Broddrick, Jared T. ; Chen, Ke ; Heckmann, David ; Szubin, Richard ; Hefner, Ying ; Feist, Adam M. ; Palsson, Bernhard O.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2019-07, Vol.116 (28), p.14368-14373
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ArticlesPeer ReviewedFull Text
Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow
Author / Creator:Brunk, Elizabeth ; Chang, Roger L. ; Xia, Jing ; Hefzi, Hooman ; Yurkovich, James T. ; Kim, Donghyuk ; Buckmiller, Evan ; Wang, Harris H. ; Cho, Byung-Kwan ; Yang, Chen ; Palsson, Bernhard O. ; Church, George M. ; Lewis, Nathan E.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2018-10, Vol.115 (43), p.11096-11101
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Select record 33
ArticlesPeer ReviewedFull Text
Principles of proteome allocation are revealed using proteomic data and genome-scale models
Author / Creator:Yang, Laurence ; Yurkovich, James T. ; Lloyd, Colton J. ; Ebrahim, Ali ; Saunders, Michael A. ; Palsson, Bernhard O.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2016-11, Vol.6 (1), p.36734, Article 36734
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Select record 34
ArticlesPeer ReviewedFull Text
Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions
Author / Creator:Kavvas, Erol S. ; Seif, Yara ; Yurkovich, James T. ; Norsigian, Charles ; Poudel, Saugat ; Greenwald, William W. ; Ghatak, Sankha ; Palsson, Bernhard O. ; Monk, Jonathan M.
Publisher:England: BioMed Central Ltd
Journal title:BMC systems biology, 2018-03, Vol.12 (1), p.25, Article 25
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Select record 35
ArticlesPeer ReviewedFull Text
Systems biology as an emerging paradigm in transfusion medicine
Author / Creator:Yurkovich, James T. ; Bordbar, Aarash ; Sigurjónsson, Ólafur E. ; Palsson, Bernhard O.
Publisher:England: BioMed Central Ltd
Journal title:BMC systems biology, 2018-03, Vol.12 (1), p.31, Article 31
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Select record 36
ArticlesPeer ReviewedFull Text
Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans
Author / Creator:Wilmanski, Tomasz ; Diener, Christian ; Rappaport, Noa ; Patwardhan, Sushmita ; Wiedrick, Jack ; Lapidus, Jodi ; Earls, John C. ; Zimmer, Anat ; Glusman, Gustavo ; Robinson, Max ; Yurkovich, James T. ; Kado, Deborah M. ; Cauley, Jane A. ; Zmuda, Joseph ; Lane, Nancy E. ; Magis, Andrew T. ; Lovejoy, Jennifer C. ; Hood, Leroy ; Gibbons, Sean M. ; Orwoll, Eric S. ; Price, Nathan D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature metabolism, 2021-04, Vol.3 (4), p.586-586
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Select record 37
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The quantitative metabolome is shaped by abiotic constraints
Author / Creator:Akbari, Amir ; Yurkovich, James T ; Zielinski, Daniel C ; Palsson, Bernhard O
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-09
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Systems-level physiology of the human red blood cell is computed from metabolic and macromolecular mechanisms
Author / Creator:Yurkovich, James T ; Yang, Laurence ; Palsson, Bernhard O
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-10
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ArticlesFull Text
Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data
Author / Creator:Phaneuf, Patrick Victor ; Zielinski, Daniel Craig ; Yurkovich, James T ; Johnsen, Josefin ; Szubin, Richard ; Yang, Lei ; Kim, Se Hyeuk ; Schulz, Sebastian ; Wu, Muyao ; Dalldorf, Christopher ; Ozdemir, Emre ; Palsson, Bernhard O ; Feist, Adam
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-07
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Community standards to facilitate development and address challenges in metabolic modeling
Author / Creator:Carey, Maureen A ; Draeger, Andreas ; Papin, Jason A ; Yurkovich, James T
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-07
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Showing 21 to 40 of 46 results

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Temperature Dependence of Platelet Metabolism

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Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells

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Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data

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Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials

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Metabolic and Transcriptional Changes across Osteogenic Differentiation of Mesenchymal Stromal Cells

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Blood Is a Window into Health and Disease

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A systems approach to clinical oncology uses deep phenotyping to deliver personalized care

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The transition from genomics to phenomics in personalized population health

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Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities

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Gut microbiome pattern reflects healthy ageing and predicts survival in humans

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Cellular responses to reactive oxygen species are predicted from molecular mechanisms

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Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow

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Principles of proteome allocation are revealed using proteomic data and genome-scale models

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Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions

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Systems biology as an emerging paradigm in transfusion medicine

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Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans

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The quantitative metabolome is shaped by abiotic constraints

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Systems-level physiology of the human red blood cell is computed from metabolic and macromolecular mechanisms

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Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data

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Community standards to facilitate development and address challenges in metabolic modeling

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