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ArticlesPeer ReviewedFull Text
Initialization is critical for preserving global data structure in both t-SNE and UMAP
Author / Creator:Kobak, Dmitry ; Linderman, George C.
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2021-02, Vol.39 (2), p.156-157
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ArticlesPeer ReviewedFull Text
Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets
Author / Creator:Belkina, Anna C. ; Ciccolella, Christopher O. ; Anno, Rina ; Halpert, Richard ; Spidlen, Josef ; Snyder-Cappione, Jennifer E.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-11, Vol.10 (1), p.5415-12, Article 5415
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ArticlesPeer ReviewedFull Text
Computational flow cytometry: helping to make sense of high-dimensional immunology data
Author / Creator:Saeys, Yvan ; Van Gassen, Sofie ; Lambrecht, Bart N.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Immunology, 2016-07, Vol.16 (7), p.449-462
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ArticlesPeer ReviewedFull Text
Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types
Author / Creator:van Unen, Vincent ; Höllt, Thomas ; Pezzotti, Nicola ; Li, Na ; Reinders, Marcel J. T. ; Eisemann, Elmar ; Koning, Frits ; Vilanova, Anna ; Lelieveldt, Boudewijn P. F.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2017-11, Vol.8 (1), p.1740-10, Article 1740
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ArticlesPeer ReviewedFull Text
Directed cardiomyocyte differentiation from human pluripotent stem cells by modulating Wnt/β-catenin signaling under fully defined conditions
Author / Creator:Lian, Xiaojun ; Zhang, Jianhua ; Azarin, Samira M ; Zhu, Kexian ; Hazeltine, Laurie B ; Bao, Xiaoping ; Hsiao, Cheston ; Kamp, Timothy J ; Palecek, Sean P
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2013-01, Vol.8 (1), p.162-175
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ArticlesPeer ReviewedFull Text
Low-density lipoprotein mimics blood plasma-derived exosomes and microvesicles during isolation and detection
Author / Creator:Sódar, Barbara W ; Kittel, Ágnes ; Pálóczi, Krisztina ; Vukman, Krisztina V ; Osteikoetxea, Xabier ; Szabó-Taylor, Katalin ; Németh, Andrea ; Sperlágh, Beáta ; Baranyai, Tamás ; Giricz, Zoltán ; Wiener, Zoltán ; Turiák, Lilla ; Drahos, László ; Pállinger, Éva ; Vékey, Károly ; Ferdinandy, Péter ; Falus, András ; Buzás, Edit Irén
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2016-04, Vol.6 (1), p.24316-24316, Article 24316
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ArticlesPeer ReviewedFull Text
Next Generation Flow for highly sensitive and standardized detection of minimal residual disease in multiple myeloma
Author / Creator:Flores-Montero, J ; Sanoja-Flores, L ; Paiva, B ; Puig, N ; García-Sánchez, O ; Böttcher, S ; van der Velden, V H J ; Pérez-Morán, J-J ; Vidriales, M-B ; García-Sanz, R ; Jimenez, C ; González, M ; Martínez-López, J ; Corral-Mateos, A ; Grigore, G-E ; Fluxá, R ; Pontes, R ; Caetano, J ; Sedek, L ; del Cañizo, M-C ; Bladé, J ; Lahuerta, J-J ; Aguilar, C ; Bárez, A ; García-Mateo, A ; Labrador, J ; Leoz, P ; Aguilera-Sanz, C ; San-Miguel, J ; Mateos, M-V ; Durie, B ; van Dongen, J J M ; Orfao, A
Publisher:London: Nature Publishing Group UK
Journal title:Leukemia, 2017-10, Vol.31 (10), p.2094-2103
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ArticlesPeer ReviewedFull Text
Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm
Author / Creator:Zunder, Eli R ; Finck, Rachel ; Behbehani, Gregory K ; Amir, El-ad D ; Krishnaswamy, Smita ; Gonzalez, Veronica D ; Lorang, Cynthia G ; Bjornson, Zach ; Spitzer, Matthew H ; Bodenmiller, Bernd ; Fantl, Wendy J ; Pe'er, Dana ; Nolan, Garry P
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2015-02, Vol.10 (2), p.316-333
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ArticlesPeer ReviewedFull Text
Label-free cell cycle analysis for high-throughput imaging flow cytometry
Author / Creator:Blasi, Thomas ; Hennig, Holger ; Summers, Huw D. ; Theis, Fabian J. ; Cerveira, Joana ; Patterson, James O. ; Davies, Derek ; Filby, Andrew ; Carpenter, Anne E. ; Rees, Paul
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-01, Vol.7 (1), p.10256-10256, Article 10256
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ArticlesPeer ReviewedFull Text
viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
Author / Creator:Amir, El-ad David ; Davis, Kara L ; Tadmor, Michelle D ; Simonds, Erin F ; Levine, Jacob H ; Bendall, Sean C ; Shenfeld, Daniel K ; Krishnaswamy, Smita ; Nolan, Garry P ; Pe'er, Dana
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2013-06, Vol.31 (6), p.545-552
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ArticlesPeer ReviewedFull Text
Real-time deformability cytometry: on-the-fly cell mechanical phenotyping
Author / Creator:Otto, Oliver ; Rosendahl, Philipp ; Mietke, Alexander ; Golfier, Stefan ; Herold, Christoph ; Klaue, Daniel ; Girardo, Salvatore ; Pagliara, Stefano ; Ekpenyong, Andrew ; Jacobi, Angela ; Wobus, Manja ; Töpfner, Nicole ; Keyser, Ulrich F ; Mansfeld, Jörg ; Fischer-Friedrich, Elisabeth ; Guck, Jochen
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2015-03, Vol.12 (3), p.199-202
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ArticlesPeer ReviewedFull Text
Development, application and computational analysis of high-dimensional fluorescent antibody panels for single-cell flow cytometry
Author / Creator:Brummelman, Jolanda ; Haftmann, Claudia ; Núñez, Nicolás Gonzalo ; Alvisi, Giorgia ; Mazza, Emilia M. C. ; Becher, Burkhard ; Lugli, Enrico
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2019-07, Vol.14 (7), p.1946-1969
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ArticlesPeer ReviewedFull Text
Single-cell technologies for monitoring immune systems
Author / Creator:Chattopadhyay, Pratip K ; Gierahn, Todd M ; Roederer, Mario ; Love, J Christopher
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2014-02, Vol.15 (2), p.128-135
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ArticlesPeer ReviewedFull Text
An updated guide for the perplexed: cytometry in the high-dimensional era
Author / Creator:Liechti, Thomas ; Weber, Lukas M. ; Ashhurst, Thomas M. ; Stanley, Natalie ; Prlic, Martin ; Van Gassen, Sofie ; Mair, Florian
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2021-10, Vol.22 (10), p.1190-1197
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ArticlesPeer ReviewedFull Text
Standardizing immunophenotyping for the Human Immunology Project
Author / Creator:Maecker, Holden T. ; McCoy, J. Philip ; Nussenblatt, Robert
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Immunology, 2012-03, Vol.12 (3), p.191-200
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ArticlesPeer ReviewedFull Text
Isolation of skeletal muscle stem cells by fluorescence-activated cell sorting
Author / Creator:Liu, Ling ; Cheung, Tom H ; Charville, Gregory W ; Rando, Thomas A
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2015-10, Vol.10 (10), p.1612-1624
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ArticlesPeer ReviewedFull Text
Analyzing high-dimensional cytometry data using FlowSOM
Author / Creator:Quintelier, Katrien ; Couckuyt, Artuur ; Emmaneel, Annelies ; Aerts, Joachim ; Saeys, Yvan ; Van Gassen, Sofie
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2021-08, Vol.16 (8), p.3775-3801
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Publisher Correction: High-throughput fluorescence lifetime imaging flow cytometry
Author / Creator:Kanno, Hiroshi ; Hiramatsu, Kotaro ; Mikami, Hideharu ; Nakayashiki, Atsushi ; Yamashita, Shota ; Nagai, Arata ; Okabe, Kohki ; Li, Fan ; Yin, Fei ; Tominaga, Keita ; Bicer, Omer Faruk ; Noma, Ryohei ; Kiani, Bahareh ; Efa, Olga ; Büscher, Martin ; Wazawa, Tetsuichi ; Sonoshita, Masahiro ; Shintaku, Hirofumi ; Nagai, Takeharu ; Braun, Sigurd ; Houston, Jessica P. ; Rashad, Sherif ; Niizuma, Kuniyasu ; Goda, Keisuke
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-01, Vol.16 (1), p.582-4, Article 582
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ArticlesPeer ReviewedFull Text
Intravascular staining for discrimination of vascular and tissue leukocytes
Author / Creator:Anderson, Kristin G ; Mayer-Barber, Katrin ; Sung, Heungsup ; Beura, Lalit ; James, Britnie R ; Taylor, Justin J ; Qunaj, Lindor ; Griffith, Thomas S ; Vezys, Vaiva ; Barber, Daniel L ; Masopust, David
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2014-01, Vol.9 (1), p.209-222
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ArticlesPeer ReviewedFull Text
Highly multiplexed simultaneous detection of RNAs and proteins in single cells
Author / Creator:Frei, Andreas P ; Bava, Felice-Alessio ; Zunder, Eli R ; Hsieh, Elena W Y ; Chen, Shih-Yu ; Nolan, Garry P ; Gherardini, Pier Federico
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2016-03, Vol.13 (3), p.269-275
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Showing 1 to 20 of 260 results

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Initialization is critical for preserving global data structure in both t-SNE and UMAP

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Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets

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Computational flow cytometry: helping to make sense of high-dimensional immunology data

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Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types

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Directed cardiomyocyte differentiation from human pluripotent stem cells by modulating Wnt/β-catenin signaling under fully defined conditions

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Low-density lipoprotein mimics blood plasma-derived exosomes and microvesicles during isolation and detection

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Next Generation Flow for highly sensitive and standardized detection of minimal residual disease in multiple myeloma

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Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

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Label-free cell cycle analysis for high-throughput imaging flow cytometry

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viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

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Real-time deformability cytometry: on-the-fly cell mechanical phenotyping

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Development, application and computational analysis of high-dimensional fluorescent antibody panels for single-cell flow cytometry

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Single-cell technologies for monitoring immune systems

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An updated guide for the perplexed: cytometry in the high-dimensional era

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Standardizing immunophenotyping for the Human Immunology Project

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Isolation of skeletal muscle stem cells by fluorescence-activated cell sorting

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Analyzing high-dimensional cytometry data using FlowSOM

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Publisher Correction: High-throughput fluorescence lifetime imaging flow cytometry

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Intravascular staining for discrimination of vascular and tissue leukocytes

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Highly multiplexed simultaneous detection of RNAs and proteins in single cells

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