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ArticlesPeer ReviewedFull Text
Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs
Author / Creator:Yimit, Askar ; Adebali, Ogun ; Sancar, Aziz ; Jiang, Yuchao
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-01, Vol.10 (1), p.309-11, Article 309
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Dynamic maps of UV damage formation and repair for the human genome
Author / Creator:Hu, Jinchuan ; Adebali, Ogun ; Adar, Sheera ; Sancar, Aziz
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2017-06, Vol.114 (26), p.6758-6763
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PHACT: Phylogeny-Aware Computing of Tolerance for Missense Mutations
Author / Creator:Kuru, Nurdan ; Dereli, Onur ; Akkoyun, Emrah ; Bircan, Aylin ; Tastan, Oznur ; Adebali, Ogun
Publisher:United States: Oxford University Press
Journal title:Molecular biology and evolution, 2022-06, Vol.39 (6)
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Genome-wide mapping of nucleotide excision repair with XR-seq
Author / Creator:Hu, Jinchuan ; Li, Wentao ; Adebali, Ogun ; Yang, Yanyan ; Oztas, Onur ; Selby, Christopher P. ; Sancar, Aziz
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2019-01, Vol.14 (1), p.248-282
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The Mutation Profile of SARS-CoV-2 Is Primarily Shaped by the Host Antiviral Defense
Author / Creator:Azgari, Cem ; Kilinc, Zeynep ; Turhan, Berk ; Circi, Defne ; Adebali, Ogun
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2021-03, Vol.13 (3), p.394
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Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues
Author / Creator:Yang, Yanyan ; Adebali, Ogun ; Wu, Gang ; Selby, Christopher P. ; Chiou, Yi-Ying ; Rashid, Naim ; Hu, Jinchuan ; Hogenesch, John B. ; Sancar, Aziz
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (21), p.E4777-E4785
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Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns
Author / Creator:Oztas, Onur ; Selby, Christopher P. ; Sancar, Aziz ; Adebali, Ogun
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-04, Vol.9 (1), p.1503-8, Article 1503
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Effects of replication domains on genome-wide UV-induced DNA damage and repair
Author / Creator:Huang, Yanchao ; Azgari, Cem ; Yin, Mengdie ; Chiou, Yi-Ying ; Lindsey-Boltz, Laura A. ; Sancar, Aziz ; Hu, Jinchuan ; Adebali, Ogun
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2022-09, Vol.18 (9), p.e1010426
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Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes
Author / Creator:Upadhyay, Amit A. ; Fleetwood, Aaron D. ; Adebali, Ogun ; Finn, Robert D. ; Zhulin, Igor B.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2016-04, Vol.12 (4), p.e1004862-e1004862
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Global repair is the primary nucleotide excision repair subpathway for the removal of pyrimidine-pyrimidone (6-4) damage from the Arabidopsis genome
Author / Creator:Kaya, Sezgi ; Erdogan, Dugcar Ebrar ; Sancar, Aziz ; Adebali, Ogun ; Oztas, Onur
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-02, Vol.14 (1), p.3308-3308, Article 3308
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Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events
Author / Creator:Akkose, Umit ; Kaya, Veysel Ogulcan ; Lindsey-Boltz, Laura ; Karagoz, Zeynep ; Brown, Adam D. ; Larsen, Peter A. ; Yoder, Anne D. ; Sancar, Aziz ; Adebali, Ogun
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2021-08, Vol.22 (1), p.600-600, Article 600
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UV-induced reorganization of 3D genome mediates DNA damage response
Author / Creator:Kaya, Veysel Oğulcan ; Adebali, Ogün
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-02, Vol.16 (1), p.1376-20, Article 1376
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Downregulated NPAS4 in multiple brain regions is associated with major depressive disorder
Author / Creator:Selçuk, Berkay ; Aksu, Tuana ; Dereli, Onur ; Adebali, Ogün
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-12, Vol.13 (1), p.21596-21596, Article 21596
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Evolutionary history of calcium-sensing receptors unveils hyper/hypocalcemia-causing mutations
Author / Creator:Bircan, Aylin ; Kuru, Nurdan ; Dereli, Onur ; Selçuk, Berkay ; Adebali, Ogün
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2024-11, Vol.20 (11), p.e1012591
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PHACTboost: A Phylogeny-Aware Pathogenicity Predictor for Missense Mutations via Boosting
Author / Creator:Dereli, Onur ; Kuru, Nurdan ; Akkoyun, Emrah ; Bircan, Aylin ; Tastan, Oznur ; Adebali, Ogün
Publisher:UK: Oxford University Press
Journal title:Molecular biology and evolution, 2024-07, Vol.41 (7)
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Structural basis of frizzled 7 activation and allosteric regulation
Author / Creator:Bous, Julien ; Kinsolving, Julia ; Grätz, Lukas ; Scharf, Magdalena M. ; Voss, Jan Hendrik ; Selcuk, Berkay ; Adebali, Ogün ; Schulte, Gunnar
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-08, Vol.15 (1), p.7422-15, Article 7422
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PHACE: Phylogeny-Aware Co-Evolution
Author / Creator:Kuru, Nurdan ; Ogun Adebali
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2024-12
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Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis
Author / Creator:Akkose, Umit ; Ogun Adebali
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-03
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Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo[a]pyrene
Author / Creator:Li, Wentao ; Hu, Jinchuan ; Adebali, Ogun ; Adar, Sheera ; Yang, Yanyan ; Chiou, Yi-Ying ; Sancar, Aziz
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2017-06, Vol.114 (26), p.6752-6757
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Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome
Author / Creator:Li, Wentao ; Adebali, Ogun ; Yang, Yanyan ; Selby, Christopher P. ; Sancar, Aziz
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2018-04, Vol.115 (15), p.E3408-E3415
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Showing 1 to 20 of 31 results

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Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs

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Dynamic maps of UV damage formation and repair for the human genome

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PHACT: Phylogeny-Aware Computing of Tolerance for Missense Mutations

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Genome-wide mapping of nucleotide excision repair with XR-seq

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The Mutation Profile of SARS-CoV-2 Is Primarily Shaped by the Host Antiviral Defense

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Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues

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Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns

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Effects of replication domains on genome-wide UV-induced DNA damage and repair

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Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes

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Global repair is the primary nucleotide excision repair subpathway for the removal of pyrimidine-pyrimidone (6-4) damage from the Arabidopsis genome

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Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events

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UV-induced reorganization of 3D genome mediates DNA damage response

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Downregulated NPAS4 in multiple brain regions is associated with major depressive disorder

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Evolutionary history of calcium-sensing receptors unveils hyper/hypocalcemia-causing mutations

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PHACTboost: A Phylogeny-Aware Pathogenicity Predictor for Missense Mutations via Boosting

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Structural basis of frizzled 7 activation and allosteric regulation

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PHACE: Phylogeny-Aware Co-Evolution

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Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis

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Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo[a]pyrene

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Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome

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