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ArticlesPeer ReviewedFull Text
IGF1-mediated human embryonic stem cell self-renewal recapitulates the embryonic niche
Author / Creator:Wamaitha, Sissy E. ; Grybel, Katarzyna J. ; Alanis-Lobato, Gregorio ; Gerri, Claudia ; Ogushi, Sugako ; McCarthy, Afshan ; Mahadevaiah, Shantha K. ; Healy, Lyn ; Lea, Rebecca A. ; Molina-Arcas, Miriam ; Devito, Liani G. ; Elder, Kay ; Snell, Phil ; Christie, Leila ; Downward, Julian ; Turner, James M. A. ; Niakan, Kathy K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-02, Vol.11 (1), p.764-764, Article 764
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From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
Author / Creator:Cannistraci, Carlo Vittorio ; Alanis-Lobato, Gregorio ; Ravasi, Timothy
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2013-04, Vol.3 (1), p.1613-1613, Article 1613
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Geometric characterisation of disease modules
Author / Creator:Härtner, Franziska ; Andrade-Navarro, Miguel A. ; Alanis-Lobato, Gregorio
Publisher:Cham: Springer International Publishing
Journal title:Applied network science, 2018-12, Vol.3 (1), p.10-10, Article 10
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CellMap visualizes protein-protein interactions and subcellular localization
Author / Creator:Dallago, Christian ; Goldberg, Tatyana ; Andrade-Navarro, Miguel Angel ; Alanis-Lobato, Gregorio ; Rost, Burkhard
Publisher:England: Faculty of 1000 Ltd
Journal title:F1000 research, 2017, Vol.6, p.1824
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Initiation of a conserved trophectoderm program in human, cow and mouse embryos
Author / Creator:Gerri, Claudia ; McCarthy, Afshan ; Alanis-Lobato, Gregorio ; Demtschenko, Andrej ; Bruneau, Alexandre ; Loubersac, Sophie ; Fogarty, Norah M. E. ; Hampshire, Daniel ; Elder, Kay ; Snell, Phil ; Christie, Leila ; David, Laurent ; Van de Velde, Hilde ; Fouladi-Nashta, Ali A. ; Niakan, Kathy K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-11, Vol.587 (7834), p.443-447
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Manifold learning and maximum likelihood estimation for hyperbolic network embedding
Author / Creator:Alanis-Lobato, Gregorio ; Mier, Pablo ; Andrade-Navarro, Miguel A.
Publisher:Cham: Springer International Publishing
Journal title:Applied network science, 2016-12, Vol.1 (1), p.10-10, Article 10
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Evolutionary Study of Disorder in Protein Sequences
Author / Creator:Kastano, Kristina ; Erdős, Gábor ; Mier, Pablo ; Alanis-Lobato, Gregorio ; Promponas, Vasilis J ; Dosztányi, Zsuzsanna ; Andrade-Navarro, Miguel A
Publisher:Switzerland: MDPI AG
Journal title:Biomolecules (Basel, Switzerland), 2020-10, Vol.10 (10), p.1413
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Chronic stress deficits in reward behaviour co-occur with low nucleus accumbens dopamine activity during reward anticipation specifically
Author / Creator:Zhang, Chenfeng ; Dulinskas, Redas ; Ineichen, Christian ; Greter, Alexandra ; Sigrist, Hannes ; Li, Yulong ; Alanis-Lobato, Gregorio ; Hengerer, Bastian ; Pryce, Christopher R.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2024-08, Vol.7 (1), p.966-17, Article 966
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Stress deficits in reward behaviour are associated with and replicated by dysregulated amygdala-nucleus accumbens pathway function in mice
Author / Creator:Madur, Lorraine ; Ineichen, Christian ; Bergamini, Giorgio ; Greter, Alexandra ; Poggi, Giulia ; Cuomo-Haymour, Nagiua ; Sigrist, Hannes ; Sych, Yaroslav ; Paterna, Jean-Charles ; Bornemann, Klaus D. ; Viollet, Coralie ; Fernandez-Albert, Francesc ; Alanis-Lobato, Gregorio ; Hengerer, Bastian ; Pryce, Christopher R.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2023-04, Vol.6 (1), p.422-422, Article 422
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Detection of condition-specific marker genes from RNA-seq data with MGFR
Author / Creator:El Amrani, Khadija ; Alanis-Lobato, Gregorio ; Mah, Nancy ; Kurtz, Andreas ; Andrade-Navarro, Miguel A
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2019-05, Vol.7, p.e6970-e6970, Article e6970
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Frequent loss of heterozygosity in CRISPR-Cas9–edited early human embryos
Author / Creator:Alanis-Lobato, Gregorio ; Zohren, Jasmin ; McCarthy, Afshan ; Fogarty, Norah M. E. ; Kubikova, Nada ; Hardman, Emily ; Greco, Maria ; Wells, Dagan ; Turner, James M. A. ; Niakan, Kathy K.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2021-06, Vol.118 (22), p.1-9
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Efficient embedding of complex networks to hyperbolic space via their Laplacian
Author / Creator:Alanis-Lobato, Gregorio ; Mier, Pablo ; Andrade-Navarro, Miguel A.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2016-07, Vol.6 (1), p.30108-30108, Article 30108
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Assessing the reliability of gene expression measurements in very-low-numbers of human monocyte-derived macrophages
Author / Creator:Geiß, Carsten ; Alanis-Lobato, Gregorio ; Andrade-Navarro, Miguel ; Régnier-Vigouroux, Anne
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-11, Vol.9 (1), p.17908-13, Article 17908
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Highlighting nonlinear patterns in population genetics datasets
Author / Creator:Alanis-Lobato, Gregorio ; Cannistraci, Carlo Vittorio ; Eriksson, Anders ; Manica, Andrea ; Ravasi, Timothy
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2015-01, Vol.5 (1), p.8140-8140, Article 8140
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Erratum: From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
Author / Creator:Cannistraci, Carlo Vittorio ; Alanis-Lobato, Gregorio ; Ravasi, Timothy
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2015-07, Vol.5 (1), p.9794-9794, Article 9794
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Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system
Author / Creator:Hildebrandt, Andrea ; Alanis-Lobato, Gregorio ; Voigt, Andrea ; Zarnack, Kathi ; Andrade-Navarro, Miguel A. ; Beli, Petra ; König, Julian
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-11, Vol.7 (1), p.16582-14, Article 16582
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Frequent loss-of-heterozygosity in CRISPR-Cas9-edited early human embryos
Author / Creator:Alanis-Lobato, Gregorio ; Zohren, Jasmin ; Mccarthy, Afshan ; Fogarty, Norah Me ; Kubikova, Nada ; Hardman, Emily ; Greco, Maria ; Wells, Dagan ; James Ma Turner ; Niakan, Kathy K
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-10
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ArticlesPeer ReviewedFull Text
CellMap visualizes protein-protein interactions and subcellular localization [version 1; peer review: 1 approved, 1 approved with reservations]
Author / Creator:Dallago, Christian ; Goldberg, Tatyana ; Andrade-Navarro, Miguel Angel ; Alanis-Lobato, Gregorio ; Rost, Burkhard
Journal title:F1000 research, 2017, Vol.6, p.1824-1824
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Acknowledgement to Reviewers of Genes in 2018
Author / Creator:Genes Editorial Office
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2019-01, Vol.10 (1), p.48
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Bayesian thresholded modeling for integrating brain node and network predictors
Author / Creator:Sun, Zhe ; Xu, Wanwan ; Li, Tianxi ; Kang, Jian ; Alanis-Lobato, Gregorio ; Zhao, Yize
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2024-07
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IGF1-mediated human embryonic stem cell self-renewal recapitulates the embryonic niche

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From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks

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Geometric characterisation of disease modules

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CellMap visualizes protein-protein interactions and subcellular localization

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Initiation of a conserved trophectoderm program in human, cow and mouse embryos

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Manifold learning and maximum likelihood estimation for hyperbolic network embedding

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Evolutionary Study of Disorder in Protein Sequences

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Chronic stress deficits in reward behaviour co-occur with low nucleus accumbens dopamine activity during reward anticipation specifically

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Stress deficits in reward behaviour are associated with and replicated by dysregulated amygdala-nucleus accumbens pathway function in mice

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Detection of condition-specific marker genes from RNA-seq data with MGFR

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Frequent loss of heterozygosity in CRISPR-Cas9–edited early human embryos

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Efficient embedding of complex networks to hyperbolic space via their Laplacian

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Assessing the reliability of gene expression measurements in very-low-numbers of human monocyte-derived macrophages

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Highlighting nonlinear patterns in population genetics datasets

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Erratum: From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks

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Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system

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Frequent loss-of-heterozygosity in CRISPR-Cas9-edited early human embryos

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CellMap visualizes protein-protein interactions and subcellular localization [version 1; peer review: 1 approved, 1 approved with reservations]

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Acknowledgement to Reviewers of Genes in 2018

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Bayesian thresholded modeling for integrating brain node and network predictors

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