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The gut virome in two indigenous populations from Malaysia
Author / Creator:Lee, Chuen Zhang ; Zoqratt, Muhammad Zarul Hanifah Md ; Phipps, Maude E. ; Barr, Jeremy J. ; Lal, Sunil K. ; Ayub, Qasim ; Rahman, Sadequr
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-02, Vol.12 (1), p.1824-10, Article 1824
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Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
Author / Creator:Poznik, G David ; Xue, Yali ; Mendez, Fernando L ; Willems, Thomas F ; Massaia, Andrea ; Wilson Sayres, Melissa A ; Ayub, Qasim ; McCarthy, Shane A ; Narechania, Apurva ; Kashin, Seva ; Chen, Yuan ; Banerjee, Ruby ; Rodriguez-Flores, Juan L ; Cerezo, Maria ; Shao, Haojing ; Gymrek, Melissa ; Malhotra, Ankit ; Louzada, Sandra ; Desalle, Rob ; Ritchie, Graham R S ; Cerveira, Eliza ; Fitzgerald, Tomas W ; Garrison, Erik ; Marcketta, Anthony ; Mittelman, David ; Romanovitch, Mallory ; Zhang, Chengsheng ; Zheng-Bradley, Xiangqun ; Abecasis, Gonçalo R ; McCarroll, Steven A ; Flicek, Paul ; Underhill, Peter A ; Coin, Lachlan ; Zerbino, Daniel R ; Yang, Fengtang ; Lee, Charles ; Clarke, Laura ; Auton, Adam ; Erlich, Yaniv ; Handsaker, Robert E ; Bustamante, Carlos D ; Tyler-Smith, Chris
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2016-06, Vol.48 (6), p.593-599
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A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes
Author / Creator:MacArthur, Daniel G. ; Balasubramanian, Suganthi ; Frankish, Adam ; Huang, Ni ; Morris, James ; Walter, Klaudia ; Jostins, Luke ; Habegger, Lukas ; Pickrell, Joseph K. ; Montgomery, Stephen B. ; Albers, Cornelis A. ; Zhang, Zhengdong D. ; Conrad, Donald F. ; Lunter, Gerton ; Zheng, Hancheng ; Ayub, Qasim ; DePristo, Mark A. ; Banks, Eric ; Hu, Min ; Handsaker, Robert E. ; Rosenfeld, Jeffrey A. ; Fromer, Menachem ; Jin, Mike ; Mu, Xinmeng Jasmine ; Khurana, Ekta ; Ye, Kai ; Kay, Mike ; Saunders, Gary Ian ; Suner, Marie-Marthe ; Hunt, Toby ; Barnes, H. A. ; Amid, Clara ; Carvalho-Silva, Denise R. ; Bignell, Alexandra H. ; Snow, Catherine ; Yngvadottir, Bryndis ; Bumpstead, Suzannah ; Cooper, David N. ; Xue, Yali ; Romero, Irene Gallego ; Wang, Jun ; Li, Yingrui ; Gibbs, Richard A. ; McCarroll, Steven A. ; Dermitzakis, Emmanouil T. ; Pritchard, Jonathan K. ; Barrett, Jeffrey C. ; Harrow, Jennifer ; Hurles, Matthew E. ; Gerstein, Mark B. ; Tyler-Smith, Chris
Publisher:Washington, DC: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2012-02, Vol.335 (6070), p.823-828
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Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding
Author / Creator:Xue, Yali ; Prado-Martinez, Javier ; Sudmant, Peter H. ; Narasimhan, Vagheesh ; Ayub, Qasim ; Szpak, Michal ; Frandsen, Peter ; Chen, Yuan ; Yngvadottir, Bryndis ; Cooper, David N. ; de Manuel, Marc ; Hernandez-Rodriguez, Jessica ; Lobon, Irene ; Siegismund, Hans R. ; Pagani, Luca ; Quail, Michael A. ; Hvilsom, Christina ; Mudakikwa, Antoine ; Eichler, Evan E. ; Cranfield, Michael R. ; Marques-Bonet, Tomas ; Tyler-Smith, Chris ; Scally, Aylwyn
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2015-04, Vol.348 (6231), p.242-245
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Exploring the potential of moringa leaf extract as bio stimulant for improving yield and quality of black cumin oil
Author / Creator:Mehmood, Abid ; Naveed, Khalid ; Ayub, Qasim ; Alamri, Saud ; Siddiqui, Manzer H. ; Wu, Chao ; Wang, Depeng ; Saud, Shah ; Banout, Jan ; Danish, Subhan ; Datta, Rahul ; Hammad, Hafiz Mohkum ; Nasim, Wajid ; Mubeen, Muhammad ; Shah, Farooq ; Fahad, Shah
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-12, Vol.11 (1), p.24217-10, Article 24217
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Chromosome-level reference genome assembly of the gyrfalcon (Falco rusticolus) and population genomics offer insights into the falcon population in Mongolia
Author / Creator:Al-Ajli, Farooq Omar ; Formenti, Giulio ; Fedrigo, Olivier ; Tracey, Alan ; Sims, Ying ; Howe, Kerstin ; Al-Karkhi, Ikdam M. ; Althani, Asmaa Ali ; Jarvis, Erich D. ; Rahman, Sadequr ; Ayub, Qasim
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2025-02, Vol.15 (1), p.4154-20, Article 4154
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Pan-genome and resistome analysis of extended-spectrum ß-lactamase-producing Escherichia coli: A multi-setting epidemiological surveillance study from Malaysia
Author / Creator:Dwiyanto, Jacky ; Hor, Jia Wei ; Reidpath, Daniel ; Su, Tin Tin ; Lee, Shaun Wen Huey ; Ayub, Qasim ; Mustapha, Faizah Binti ; Lee, Sui Mae ; Foo, Su Chern ; Chong, Chun Wie ; Rahman, Sadequr
Publisher:United States: Public Library of Science
Journal title:PloS one, 2022-03, Vol.17 (3), p.e0265142
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Prioritization of putatively detrimental variants in euploid miscarriages
Author / Creator:Buonaiuto, Silvia ; Biase, Immacolata Di ; Aleotti, Valentina ; Ravaei, Amin ; Marino, Adriano De ; Damaggio, Gianluca ; Chierici, Marco ; Pulijala, Madhuri ; D’Ambrosio, Palmira ; Esposito, Gabriella ; Ayub, Qasim ; Furlanello, Cesare ; Greco, Pantaleo ; Capalbo, Antonio ; Rubini, Michele ; Biase, Sebastiano Di ; Colonna, Vincenza
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-02, Vol.12 (1), p.1997-12, Article 1997
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Demographic History and Genetic Adaptation in the Himalayan Region Inferred from Genome-Wide SNP Genotypes of 49 Populations
Author / Creator:Arciero, Elena ; Kraaijenbrink, Thirsa ; Asan ; Haber, Marc ; Mezzavilla, Massimo ; Ayub, Qasim ; Wang, Wei ; Zhaxi Pingcuo ; Yang, Huanming ; Wang, Jian ; Jobling, Mark A ; George van Driem ; Xue, Yali ; de Knijff, Peter ; Tyler-Smith, Chris
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2018-08, Vol.35 (8), p.1916-1933
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Genomic and phenotypic characterization of Acinetobacter colistiniresistens isolated from the feces of a healthy member of the community
Author / Creator:Muzahid, Nazmul Hasan ; Md Zoqratt, Muhammad Zarul Hanifah ; Ten, Kah Ern ; Hussain, Md Hamed ; Su, Tin Tin ; Ayub, Qasim ; Tan, Hock Siew ; Rahman, Sadequr
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-08, Vol.13 (1), p.12596-12, Article 12596
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Prioritising positively selected variants in whole-genome sequencing data using FineMAV
Author / Creator:Wahyudi, Fadilla ; Aghakhanian, Farhang ; Rahman, Sadequr ; Teo, Yik-Ying ; Szpak, Michał ; Dhaliwal, Jasbir ; Ayub, Qasim
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2021-12, Vol.22 (1), p.604-13, Article 604
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Naegleria fowleri: differential genetic expression following treatment with Hesperidin conjugated with silver nanoparticles using RNA-Seq
Author / Creator:Siddiqui, Ruqaiyyah ; Rajendran, Kavitha ; Abdella, Bahaa ; Ayub, Qasim ; Lim, Shu Yong ; Khan, Naveed Ahmed
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Parasitology research (1987), 2020-07, Vol.119 (7), p.2351-2358
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Enrichment of low-frequency functional variants revealed by whole-genome sequencing of multiple isolated European populations
Author / Creator:Xue, Yali ; Mezzavilla, Massimo ; Haber, Marc ; McCarthy, Shane ; Chen, Yuan ; Narasimhan, Vagheesh ; Gilly, Arthur ; Ayub, Qasim ; Colonna, Vincenza ; Southam, Lorraine ; Finan, Christopher ; Massaia, Andrea ; Chheda, Himanshu ; Palta, Priit ; Ritchie, Graham ; Asimit, Jennifer ; Dedoussis, George ; Gasparini, Paolo ; Palotie, Aarno ; Ripatti, Samuli ; Soranzo, Nicole ; Toniolo, Daniela ; Wilson, James F. ; Durbin, Richard ; Tyler-Smith, Chris ; Zeggini, Eleftheria
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2017-06, Vol.8 (1), p.15927-7, Article 15927
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Characterization of multidrug-resistant Acinetobacter baumannii strain ATCC BAA1605 using whole-genome sequencing
Author / Creator:Ten, Kah Ern ; Md Zoqratt, Muhammad Zarul Hanifah ; Ayub, Qasim ; Tan, Hock Siew
Publisher:England: BioMed Central Ltd
Journal title:BMC research notes, 2021-03, Vol.14 (1), p.83-9, Article 83
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Cytosine methylation of rice mitochondrial DNA from grain and leaf tissues
Author / Creator:Muniandy, Kanagesswari ; Tan, Mun Hua ; Shehnaz, Saiyara ; Song, Beng Kah ; Ayub, Qasim ; Rahman, Sadequr
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Planta, 2020-02, Vol.251 (2), p.57, Article 57
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The genetic drivers for the successful invasive potential of a generalist bird, the House crow
Author / Creator:Iqbal Farheena ; Krzeminska-Ahmadzai Urszula ; Ayub Qasim ; Wilson, Robyn ; Song Beng Kah ; Fahim Muhammad ; Rahman Sadequr
Publisher:Dordrecht: Springer Nature B.V
Journal title:Biological invasions, 2022-03, Vol.24 (3), p.861-878
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Transcriptome analysis of Escherichia coli K1 after therapy with hesperidin conjugated with silver nanoparticles
Author / Creator:Masri, Abdulkader ; Khan, Naveed Ahmed ; Zoqratt, Muhammad Zarul Hanifah Md ; Ayub, Qasim ; Anwar, Ayaz ; Rao, Komal ; Shah, Muhammad Raza ; Siddiqui, Ruqaiyyah
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2021-02, Vol.21 (1), p.51-11, Article 51
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FineMAV: prioritizing candidate genetic variants driving local adaptations in human populations
Author / Creator:Szpak, Michał ; Mezzavilla, Massimo ; Ayub, Qasim ; Chen, Yuan ; Xue, Yali ; Tyler-Smith, Chris
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-01, Vol.19 (1), p.5-5, Article 5
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Sequence analyses of Malaysian Indigenous communities reveal historical admixture between Hoabinhian hunter-gatherers and Neolithic farmers
Author / Creator:Aghakhanian, Farhang ; Hoh, Boon-Peng ; Yew, Chee-Wei ; Kumar Subbiah, Vijay ; Xue, Yali ; Tyler-Smith, Chris ; Ayub, Qasim ; Phipps, Maude E.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-08, Vol.12 (1), p.13743-11, Article 13743
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Determining Soil Microbial Communities and Their Influence on Ganoderma Disease Incidences in Oil Palm (Elaeis guineensis) via High-Throughput Sequencing
Author / Creator:Goh, Yit Kheng ; Zoqratt, Muhammad Zarul Hanifah Md ; Goh, You Keng ; Ayub, Qasim ; Ting, Adeline Su Yien
Publisher:Switzerland: MDPI AG
Journal title:Biology (Basel, Switzerland), 2020-11, Vol.9 (12), p.424
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The gut virome in two indigenous populations from Malaysia

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Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences

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A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

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Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

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Exploring the potential of moringa leaf extract as bio stimulant for improving yield and quality of black cumin oil

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Chromosome-level reference genome assembly of the gyrfalcon (Falco rusticolus) and population genomics offer insights into the falcon population in Mongolia

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Pan-genome and resistome analysis of extended-spectrum ß-lactamase-producing Escherichia coli: A multi-setting epidemiological surveillance study from Malaysia

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Prioritization of putatively detrimental variants in euploid miscarriages

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Demographic History and Genetic Adaptation in the Himalayan Region Inferred from Genome-Wide SNP Genotypes of 49 Populations

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Genomic and phenotypic characterization of Acinetobacter colistiniresistens isolated from the feces of a healthy member of the community

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Prioritising positively selected variants in whole-genome sequencing data using FineMAV

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Naegleria fowleri: differential genetic expression following treatment with Hesperidin conjugated with silver nanoparticles using RNA-Seq

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Enrichment of low-frequency functional variants revealed by whole-genome sequencing of multiple isolated European populations

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Characterization of multidrug-resistant Acinetobacter baumannii strain ATCC BAA1605 using whole-genome sequencing

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Cytosine methylation of rice mitochondrial DNA from grain and leaf tissues

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The genetic drivers for the successful invasive potential of a generalist bird, the House crow

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Transcriptome analysis of Escherichia coli K1 after therapy with hesperidin conjugated with silver nanoparticles

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FineMAV: prioritizing candidate genetic variants driving local adaptations in human populations

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Sequence analyses of Malaysian Indigenous communities reveal historical admixture between Hoabinhian hunter-gatherers and Neolithic farmers

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Determining Soil Microbial Communities and Their Influence on Ganoderma Disease Incidences in Oil Palm (Elaeis guineensis) via High-Throughput Sequencing

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