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ArticlesPeer ReviewedFull Text
Technology dictates algorithms: recent developments in read alignment
Author / Creator:Alser, Mohammed ; Rotman, Jeremy ; Deshpande, Dhrithi ; Taraszka, Kodi ; Shi, Huwenbo ; Baykal, Pelin Icer ; Yang, Harry Taegyun ; Xue, Victor ; Knyazev, Sergey ; Singer, Benjamin D. ; Balliu, Brunilda ; Koslicki, David ; Skums, Pavel ; Zelikovsky, Alex ; Alkan, Can ; Mutlu, Onur ; Mangul, Serghei
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2021-08, Vol.22 (1), p.249-249, Article 249
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Evaluating supervised and unsupervised background noise correction in human gut microbiome data
Author / Creator:Briscoe, Leah ; Balliu, Brunilda ; Sankararaman, Sriram ; Halperin, Eran ; Garud, Nandita R.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2022-02, Vol.18 (2), p.e1009838-e1009838
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Multi-context genetic modeling of transcriptional regulation resolves novel disease loci
Author / Creator:Thompson, Mike ; Gordon, Mary Grace ; Lu, Andrew ; Tandon, Anchit ; Halperin, Eran ; Gusev, Alexander ; Ye, Chun Jimmie ; Balliu, Brunilda ; Zaitlen, Noah
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-09, Vol.13 (1), p.5704-15, Article 5704
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Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx
Author / Creator:Gay, Nicole R. ; Gloudemans, Michael ; Antonio, Margaret L. ; Abell, Nathan S. ; Balliu, Brunilda ; Park, YoSon ; Martin, Alicia R. ; Musharoff, Shaila ; Rao, Abhiram S. ; Aguet, François ; Barbeira, Alvaro N. ; Bonazzola, Rodrigo ; Hormozdiari, Farhad ; Ardlie, Kristin G. ; Brown, Christopher D. ; Im, Hae Kyung ; Lappalainen, Tuuli ; Wen, Xiaoquan ; Montgomery, Stephen B.
Publisher:England: BioMed Central
Journal title:Genome Biology, 2020-09, Vol.21 (1), p.233-233, Article 233
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A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity
Author / Creator:Goodman-Meza, David ; Rudas, Akos ; Chiang, Jeffrey N. ; Adamson, Paul C. ; Ebinger, Joseph ; Sun, Nancy ; Botting, Patrick ; Fulcher, Jennifer A. ; Saab, Faysal G. ; Brook, Rachel ; Eskin, Eleazar ; An, Ulzee ; Kordi, Misagh ; Jew, Brandon ; Balliu, Brunilda ; Chen, Zeyuan ; Hill, Brian L. ; Rahmani, Elior ; Halperin, Eran ; Manuel, Vladimir
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-09, Vol.15 (9), p.e0239474
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Genetic regulation of gene expression and splicing during a 10-year period of human aging
Author / Creator:Balliu, Brunilda ; Durrant, Matthew ; Goede, Olivia de ; Abell, Nathan ; Li, Xin ; Liu, Boxiang ; Gloudemans, Michael J. ; Cook, Naomi L. ; Smith, Kevin S. ; Knowles, David A. ; Pala, Mauro ; Cucca, Francesco ; Schlessinger, David ; Jaiswal, Siddhartha ; Sabatti, Chiara ; Lind, Lars ; Ingelsson, Erik ; Montgomery, Stephen B.
Publisher:England: BioMed Central
Journal title:Genome Biology, 2019-11, Vol.20 (1), p.230-230, Article 230
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Increased body mass index is linked to systemic inflammation through altered chromatin co-accessibility in human preadipocytes
Author / Creator:Garske, Kristina M. ; Kar, Asha ; Comenho, Caroline ; Balliu, Brunilda ; Pan, David Z. ; Bhagat, Yash V. ; Rosenberg, Gregory ; Koka, Amogha ; Das, Sankha Subhra ; Miao, Zong ; Sinsheimer, Janet S. ; Kaprio, Jaakko ; Pietiläinen, Kirsi H. ; Pajukanta, Päivi
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-07, Vol.14 (1), p.4214-4214, Article 4214
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Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative
Author / Creator:Johnson, Ruth ; Ding, Yi ; Venkateswaran, Vidhya ; Bhattacharya, Arjun ; Boulier, Kristin ; Chiu, Alec ; Knyazev, Sergey ; Schwarz, Tommer ; Freund, Malika ; Zhan, Lingyu ; Burch, Kathryn S. ; Caggiano, Christa ; Hill, Brian ; Rakocz, Nadav ; Balliu, Brunilda ; Denny, Christopher T. ; Sul, Jae Hoon ; Zaitlen, Noah ; Arboleda, Valerie A. ; Halperin, Eran ; Sankararaman, Sriram ; Butte, Manish J. ; Lajonchere, Clara ; Geschwind, Daniel H. ; Pasaniuc, Bogdan
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2022-09, Vol.14 (1), p.104-23, Article 104
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Association of image‐defined risk factors with clinical features, histopathology, and outcomes in neuroblastoma
Author / Creator:Temple, William C. ; Vo, Kieuhoa T. ; Matthay, Katherine K. ; Balliu, Brunilda ; Coleman, Christina ; Michlitsch, Jennifer ; Phelps, Andrew ; Behr, Spencer ; Zapala, Matthew A.
Publisher:United States: John Wiley & Sons, Inc
Journal title:Cancer medicine (Malden, MA), 2021-04, Vol.10 (7), p.2232-2241
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Integration of genetic colocalizations with physiological and pharmacological perturbations identifies cardiometabolic disease genes
Author / Creator:Gloudemans, Michael J. ; Balliu, Brunilda ; Nachun, Daniel ; Schnurr, Theresia M. ; Durrant, Matthew G. ; Ingelsson, Erik ; Wabitsch, Martin ; Quertermous, Thomas ; Montgomery, Stephen B. ; Knowles, Joshua W. ; Carcamo-Orive, Ivan
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2022-03, Vol.14 (1), p.31-16, Article 31
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Comparing self reported and physiological sleep quality from consumer devices to depression and neurocognitive performance
Author / Creator:Akre, Samir ; Cohen, Zachary D. ; Welborn, Amelia ; Zbozinek, Tomislav D. ; Balliu, Brunilda ; Craske, Michelle G. ; Bui, Alex A. T.
Publisher:London: Nature Publishing Group UK
Journal title:NPJ digital medicine, 2025-02, Vol.8 (1), p.92-12
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Personalized mood prediction from patterns of behavior collected with smartphones
Author / Creator:Balliu, Brunilda ; Douglas, Chris ; Seok, Darsol ; Shenhav, Liat ; Wu, Yue ; Chatzopoulou, Doxa ; Kaiser, William ; Chen, Victor ; Kim, Jennifer ; Deverasetty, Sandeep ; Arnaudova, Inna ; Gibbons, Robert ; Congdon, Eliza ; Craske, Michelle G. ; Freimer, Nelson ; Halperin, Eran ; Sankararaman, Sriram ; Flint, Jonathan
Publisher:London: Nature Publishing Group UK
Journal title:NPJ digital medicine, 2024-02, Vol.7 (1), p.49-49, Article 49
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Phenome-Wide Association Study of Polygenic Risk Score for Alzheimer’s Disease in Electronic Health Records
Author / Creator:Fu, Mingzhou ; UCLA Precision Health Data Discovery Repository Working Group ; UCLA Precision Health ATLAS Working Group ; Chang, Timothy S ; Antonio, Anna L ; Ariannejad, Maryam ; Badillo, Angela M ; Balliu, Brunilda ; Berkovich, Yael ; Broudy, Michael ; Dang, Tony ; Denny, Chris ; Eskin, Eleazar ; Halperin, Eran ; Hill, Brian L ; Jain, Ankur ; Katakwar, Vivek ; Lajonchere, Clara ; Magyar, Clara ; Minton, Sheila ; Mohammed, Ghouse ; Muhamed, Ariff ; Pavan, Pabba ; Pfeffer, Michael A ; Rakocz, Nadav ; Rudas, Akos ; Salonga, Rey ; Sanders, Timothy J ; Tung, Paul ; Vu, Vu ; Zheng, Ailsa ; Jhnson, Ruth ; Ding, Yi ; Chiu, Alec ; Sul, Jae-Hoon ; Sankraraman, Sriram ; Pasaniuc, Bogdan
Publisher:Lausanne: Frontiers Research Foundation
Journal title:Frontiers in aging neuroscience, 2022-03
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Distinctive facial features in idiopathic Moyamoya disease in Caucasians: a first systematic analysis
Author / Creator:Kraemer, Markus ; Huynh, Quoc Bao ; Wieczorek, Dagmar ; Balliu, Brunilda ; Mikat, Barbara ; Boehringer, Stefan
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2018-06, Vol.6, p.e4740-e4740, Article e4740
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Author Correction: Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative
Author / Creator:Johnson, Ruth ; Ding, Yi ; Venkateswaran, Vidhya ; Bhattacharya, Arjun ; Boulier, Kristin ; Chiu, Alec ; Knyazev, Sergey ; Schwarz, Tommer ; Freund, Malika ; Zhan, Lingyu ; Burch, Kathryn S. ; Caggiano, Christa ; Hill, Brian ; Rakocz, Nadav ; Balliu, Brunilda ; Denny, Christopher T. ; Sul, Jae Hoon ; Zaitlen, Noah ; Arboleda, Valerie A. ; Halperin, Eran ; Sankararaman, Sriram ; Butte, Manish J. ; Lajonchere, Clara ; Geschwind, Daniel H. ; Pasaniuc, Bogdan
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2022-11, Vol.14 (1), p.128-128, Article 128
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Genetic analyses of human fetal retinal pigment epithelium gene expression suggest ocular disease mechanisms
Author / Creator:Liu, Boxiang ; Calton, Melissa A. ; Abell, Nathan S. ; Benchorin, Gillie ; Gloudemans, Michael J. ; Chen, Ming ; Hu, Jane ; Li, Xin ; Balliu, Brunilda ; Bok, Dean ; Montgomery, Stephen B. ; Vollrath, Douglas
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2019-05, Vol.2 (1), p.186-186, Article 186
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Classification and Visualization Based on Derived Image Features: Application to Genetic Syndromes
Author / Creator:Balliu, Brunilda ; Würtz, Rolf P. ; Horsthemke, Bernhard ; Wieczorek, Dagmar ; Böhringer, Stefan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-11, Vol.9 (11), p.e109033-e109033
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CHEK21100delC homozygosity in the Netherlands—prevalence and risk of breast and lung cancer
Author / Creator:Huijts, Petra EA ; Hollestelle, Antoinette ; Balliu, Brunilda ; Houwing-Duistermaat, Jeanine J ; Meijers, Caro M ; Blom, Jannet C ; Ozturk, Bahar ; Krol-Warmerdam, Elly MM ; Wijnen, Juul ; Berns, Els MJJ ; Martens, John WM ; Seynaeve, Caroline ; Kiemeney, Lambertus A ; van der Heijden, Henricus F ; Tollenaar, Rob AEM ; Devilee, Peter ; van Asperen, Christi J
Publisher:England: Nature Publishing Group
Journal title:European journal of human genetics : EJHG, 2014-01, Vol.22 (1), p.46-51
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A Novel Test for Detecting SNP–SNP Interactions in Case-Only Trio Studies
Author / Creator:Balliu, Brunilda ; Zaitlen, Noah
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2016-04, Vol.202 (4), p.1289-1297
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Genetic effects on gene expression across human tissues
Author / Creator:Battle, Alexis ; Brown, Christopher D ; Engelhardt, Barbara E ; Montgomery, Stephen B
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2017-10, Vol.550 (7675), p.204-213
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Showing 1 to 20 of 46 results

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Technology dictates algorithms: recent developments in read alignment

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Evaluating supervised and unsupervised background noise correction in human gut microbiome data

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Multi-context genetic modeling of transcriptional regulation resolves novel disease loci

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Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

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A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity

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Genetic regulation of gene expression and splicing during a 10-year period of human aging

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Increased body mass index is linked to systemic inflammation through altered chromatin co-accessibility in human preadipocytes

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Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative

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Association of image‐defined risk factors with clinical features, histopathology, and outcomes in neuroblastoma

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Integration of genetic colocalizations with physiological and pharmacological perturbations identifies cardiometabolic disease genes

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Comparing self reported and physiological sleep quality from consumer devices to depression and neurocognitive performance

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Personalized mood prediction from patterns of behavior collected with smartphones

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Phenome-Wide Association Study of Polygenic Risk Score for Alzheimer’s Disease in Electronic Health Records

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Distinctive facial features in idiopathic Moyamoya disease in Caucasians: a first systematic analysis

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Author Correction: Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative

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Genetic analyses of human fetal retinal pigment epithelium gene expression suggest ocular disease mechanisms

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Classification and Visualization Based on Derived Image Features: Application to Genetic Syndromes

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CHEK21100delC homozygosity in the Netherlands—prevalence and risk of breast and lung cancer

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A Novel Test for Detecting SNP–SNP Interactions in Case-Only Trio Studies

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Genetic effects on gene expression across human tissues

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