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Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning
Author / Creator:Ho, Chi-Sing ; Jean, Neal ; Hogan, Catherine A. ; Blackmon, Lena ; Jeffrey, Stefanie S. ; Holodniy, Mark ; Banaei, Niaz ; Saleh, Amr A. E. ; Ermon, Stefano ; Dionne, Jennifer
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-10, Vol.10 (1), p.4927-8, Article 4927
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Electric field-driven microfluidics for rapid CRISPR-based diagnostics and its application to detection of SARS-CoV-2
Author / Creator:Ramachandran, Ashwin ; Huyke, Diego A. ; Sharma, Eesha ; Sahoo, Malaya K. ; Huang, ChunHong ; Banaei, Niaz ; Pinsky, Benjamin A. ; Santiago, Juan G.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2020-11, Vol.117 (47), p.29518-29525
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Precision identification of diverse bloodstream pathogens in the gut microbiome
Author / Creator:Tamburini, Fiona B. ; Andermann, Tessa M. ; Tkachenko, Ekaterina ; Senchyna, Fiona ; Banaei, Niaz ; Bhatt, Ami S.
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2018-12, Vol.24 (12), p.1809-1814
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Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults
Author / Creator:Siranosian, Benjamin A. ; Brooks, Erin F. ; Andermann, Tessa ; Rezvani, Andrew R. ; Banaei, Niaz ; Tang, Hua ; Bhatt, Ami S.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-01, Vol.13 (1), p.586-586, Article 586
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The immunoregulatory landscape of human tuberculosis granulomas
Author / Creator:McCaffrey, Erin F. ; Donato, Michele ; Keren, Leeat ; Chen, Zhenghao ; Delmastro, Alea ; Fitzpatrick, Megan B. ; Gupta, Sanjana ; Greenwald, Noah F. ; Baranski, Alex ; Graf, William ; Kumar, Rashmi ; Bosse, Marc ; Fullaway, Christine Camacho ; Ramdial, Pratista K. ; Forgó, Erna ; Jojic, Vladimir ; Van Valen, David ; Mehra, Smriti ; Khader, Shabaana A. ; Bendall, Sean C. ; van de Rijn, Matt ; Kalman, Daniel ; Kaushal, Deepak ; Hunter, Robert L. ; Banaei, Niaz ; Steyn, Adrie J. C. ; Khatri, Purvesh ; Angelo, Michael
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2022-02, Vol.23 (2), p.318-329
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Mycobacterium marinum Infection after Iguana Bite in Costa Rica
Author / Creator:Mah, Jordan ; Walding, Kyle ; Liang, Brooke ; Rinsky, Laurence ; Mathew, Roshni ; Budvytiene, Indre ; Banaei, Niaz
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2023-06, Vol.29 (6), p.1278-1280
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A blueprint for broadly effective bacteriophage-antibiotic cocktails against bacterial infections
Author / Creator:Kim, Minyoung Kevin ; Chen, Qingquan ; Echterhof, Arne ; Pennetzdorfer, Nina ; McBride, Robert C. ; Banaei, Niaz ; Burgener, Elizabeth B. ; Milla, Carlos E. ; Bollyky, Paul L.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-11, Vol.15 (1), p.9987-15, Article 9987
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Genome-wide tiled detection of circulating Mycobacterium tuberculosis cell-free DNA using Cas13
Author / Creator:Thakku, Sri Gowtham ; Lirette, Jackson ; Murugesan, Kanagavel ; Chen, Julie ; Theron, Grant ; Banaei, Niaz ; Blainey, Paul C. ; Gomez, James ; Wong, Sharon Y. ; Hung, Deborah T.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-03, Vol.14 (1), p.1803-1803, Article 1803
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Nocardiosis in Immunocompromised Patients on Alternative Pneumocystis Prophylaxis
Author / Creator:Puing, Alfredo G. ; Epstein, David J. ; Banaei, Niaz ; Subramanian, Aruna K. ; Liu, Anne Y.
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2021-10, Vol.27 (10), p.2734-2736
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Strongyloides stercoralis Embryonated Ova in the Lung
Author / Creator:Schroeder, Lee ; Banaei, Niaz
Publisher:Boston: Massachusetts Medical Society
Journal title:The New England journal of medicine, 2013-03, Vol.368 (12), p.e15
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A retrospective longitudinal study of adenovirus group F, norovirus GI and GII, rotavirus, and enterovirus nucleic acids in wastewater solids at two wastewater treatment plants: solid-liquid partition...
Author / Creator:Boehm, Alexandria B. ; Shelden, Bridgette ; Duong, Dorothea ; Banaei, Niaz ; White, Bradley J. ; Wolfe, Marlene K.
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2024-03, Vol.9 (3), p.e0073623-e0073623
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Novel electronic biosensor for automated inoculum preparation to accelerate antimicrobial susceptibility testing
Author / Creator:Putney, Suzanne ; Theiss, Andrew H. ; Rajan, Nitin K. ; Deak, Eszter ; Buie, Creighton ; Ngo, Yvonne ; Shah, Hima ; Yuan, Victoria ; Botbol-Ponte, Elizabeth ; Hoyos-Urias, Adrian ; Knopfmacher, Oren ; Hogan, Catherine A. ; Banaei, Niaz ; Herget, Meike S.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-05, Vol.11 (1), p.11360-11360, Article 11360
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LprG-Mediated Surface Expression of Lipoarabinomannan Is Essential for Virulence of Mycobacterium tuberculosis
Author / Creator:Gaur, Rajiv L. ; Ren, Kangning ; Blumenthal, Antje ; Bhamidi, Suresh ; Gibbs, Sara ; Jackson, Mary ; Zare, Richard N. ; Ehrt, Sabine ; Ernst, Joel D. ; Banaei, Niaz
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2014-09, Vol.10 (9), p.e1004376-e1004376
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Inhibition of Aspergillus fumigatus and Its Biofilm by Pseudomonas aeruginosa Is Dependent on the Source, Phenotype and Growth Conditions of the Bacterium
Author / Creator:Ferreira, Jose A. G. ; Penner, John C. ; Moss, Richard B. ; Haagensen, Janus A. J. ; Clemons, Karl V. ; Spormann, Alfred M. ; Nazik, Hasan ; Cohen, Kevin ; Banaei, Niaz ; Carolino, Elisabete ; Stevens, David A.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-08, Vol.10 (8), p.e0134692-e0134692
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Suboptimal Activation of Antigen-Specific CD4+ Effector Cells Enables Persistence of M. tuberculosis In Vivo
Author / Creator:Bold, Tyler D. ; Banaei, Niaz ; Wolf, Andrea J. ; Ernst, Joel D.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2011-05, Vol.7 (5), p.e1002063-e1002063
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Prophages are infrequently associated with antibiotic resistance in Pseudomonas aeruginosa clinical isolates
Author / Creator:Chang, Tony H. ; Pourtois, Julie D. ; Haddock, Naomi L. ; Furukawa, Daisuke ; Kelly, Kate E. ; Amanatullah, Derek F. ; Burgener, Elizabeth ; Milla, Carlos ; Banaei, Niaz ; Bollyky, Paul L.
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2025-03, Vol.10 (3), p.e0090424
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Mycobacterium tuberculosis Lipoprotein LprG Binds Lipoarabinomannan and Determines Its Cell Envelope Localization to Control Phagolysosomal Fusion
Author / Creator:Shukla, Supriya ; Richardson, Edward T. ; Athman, Jaffre J. ; Shi, Libin ; Wearsch, Pamela A. ; McDonald, David ; Banaei, Niaz ; Boom, W. Henry ; Jackson, Mary ; Harding, Clifford V.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2014-10, Vol.10 (10), p.e1004471-e1004471
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Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly
Author / Creator:Kang, Joyce B. ; Siranosian, Benjamin A. ; Moss, Eli L. ; Banaei, Niaz ; Andermann, Tessa M. ; Bhatt, Ami S.
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-12, Vol.20 (S16), p.585-585, Article 585
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Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak
Author / Creator:Kato-Maeda, Midori ; Ho, Christine ; Passarelli, Ben ; Banaei, Niaz ; Grinsdale, Jennifer ; Flores, Laura ; Anderson, Jillian ; Murray, Megan ; Rose, Graham ; Kawamura, L. Masae ; Pourmand, Nader ; Tariq, Muhammad A. ; Gagneux, Sebastien ; Hopewell, Philip C.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-03, Vol.8 (3), p.e58235-e58235
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Author Correction: The immunoregulatory landscape of human tuberculosis granulomas
Author / Creator:McCaffrey, Erin F. ; Donato, Michele ; Keren, Leeat ; Chen, Zhenghao ; Delmastro, Alea ; Fitzpatrick, Megan B. ; Gupta, Sanjana ; Greenwald, Noah F. ; Baranski, Alex ; Graf, William ; Kumar, Rashmi ; Bosse, Marc ; Fullaway, Christine Camacho ; Ramdial, Pratista K. ; Forgó, Erna ; Jojic, Vladimir ; Van Valen, David ; Mehra, Smriti ; Khader, Shabaana A. ; Bendall, Sean C. ; van de Rijn, Matt ; Kalman, Daniel ; Kaushal, Deepak ; Hunter, Robert L. ; Banaei, Niaz ; Steyn, Adrie J. C. ; Khatri, Purvesh ; Angelo, Michael
Publisher:New York: Nature Publishing Group US
Journal title:Nature immunology, 2022-05, Vol.23 (5), p.814-814
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Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning

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Electric field-driven microfluidics for rapid CRISPR-based diagnostics and its application to detection of SARS-CoV-2

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Precision identification of diverse bloodstream pathogens in the gut microbiome

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Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults

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The immunoregulatory landscape of human tuberculosis granulomas

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Mycobacterium marinum Infection after Iguana Bite in Costa Rica

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A blueprint for broadly effective bacteriophage-antibiotic cocktails against bacterial infections

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Genome-wide tiled detection of circulating Mycobacterium tuberculosis cell-free DNA using Cas13

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Nocardiosis in Immunocompromised Patients on Alternative Pneumocystis Prophylaxis

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Strongyloides stercoralis Embryonated Ova in the Lung

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A retrospective longitudinal study of adenovirus group F, norovirus GI and GII, rotavirus, and enterovirus nucleic acids in wastewater solids at two wastewater treatment plants: solid-liquid partition...

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Novel electronic biosensor for automated inoculum preparation to accelerate antimicrobial susceptibility testing

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LprG-Mediated Surface Expression of Lipoarabinomannan Is Essential for Virulence of Mycobacterium tuberculosis

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Inhibition of Aspergillus fumigatus and Its Biofilm by Pseudomonas aeruginosa Is Dependent on the Source, Phenotype and Growth Conditions of the Bacterium

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Suboptimal Activation of Antigen-Specific CD4+ Effector Cells Enables Persistence of M. tuberculosis In Vivo

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Prophages are infrequently associated with antibiotic resistance in Pseudomonas aeruginosa clinical isolates

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Mycobacterium tuberculosis Lipoprotein LprG Binds Lipoarabinomannan and Determines Its Cell Envelope Localization to Control Phagolysosomal Fusion

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Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly

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Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak

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Author Correction: The immunoregulatory landscape of human tuberculosis granulomas

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