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ArticlesPeer ReviewedFull Text
The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape
Author / Creator:Weinberg, Daniel N. ; Papillon-Cavanagh, Simon ; Chen, Haifen ; Yue, Yuan ; Chen, Xiao ; Rajagopalan, Kartik N. ; Horth, Cynthia ; McGuire, John T. ; Xu, Xinjing ; Nikbakht, Hamid ; Lemiesz, Agata E. ; Marchione, Dylan M. ; Marunde, Matthew R. ; Meiners, Matthew J. ; Cheek, Marcus A. ; Keogh, Michael-Christopher ; Bareke, Eric ; Djedid, Anissa ; Harutyunyan, Ashot S. ; Jabado, Nada ; Garcia, Benjamin A. ; Li, Haitao ; Allis, C. David ; Majewski, Jacek ; Lu, Chao
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2019-09, Vol.573 (7773), p.281-286
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Prognostic and predictive value of circulating tumor DNA during neoadjuvant chemotherapy for triple negative breast cancer
Author / Creator:Cavallone, Luca ; Aguilar-Mahecha, Adriana ; Lafleur, Josiane ; Brousse, Susie ; Aldamry, Mohammed ; Roseshter, Talia ; Lan, Cathy ; Alirezaie, Najmeh ; Bareke, Eric ; Majewski, Jacek ; Ferrario, Cristiano ; Hassan, Saima ; Discepola, Federico ; Seguin, Carole ; Mihalcioiu, Catalin ; Marcus, Elizabeth A. ; Robidoux, André ; Roy, Josée-Anne ; Pelmus, Manuela ; Basik, Mark
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-09, Vol.10 (1), p.14704-14704, Article 14704
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Systematic perturbations of SETD2, NSD1, NSD2, NSD3, and ASH1L reveal their distinct contributions to H3K36 methylation
Author / Creator:Shipman, Gerry A ; Padilla, Reinnier ; Horth, Cynthia ; Hu, Bo ; Bareke, Eric ; Vitorino, Francisca N ; Gongora, Joanna M ; Garcia, Benjamin A ; Lu, Chao ; Majewski, Jacek
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-10, Vol.25 (1), p.263-263, Article 263
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TRPV4 and KRAS and FGFR1 gain-of-function mutations drive giant cell lesions of the jaw
Author / Creator:Gomes, Carolina Cavalieri ; Gayden, Tenzin ; Bajic, Andrea ; Harraz, Osama F. ; Pratt, Jonathan ; Nikbakht, Hamid ; Bareke, Eric ; Diniz, Marina Gonçalves ; Castro, Wagner Henriques ; St-Onge, Pascal ; Sinnett, Daniel ; Han, HyeRim ; Rivera, Barbara ; Mikael, Leonie G. ; De Jay, Nicolas ; Kleinman, Claudia L. ; Valera, Elvis Terci ; Bassenden, Angelia V. ; Berghuis, Albert M. ; Majewski, Jacek ; Nelson, Mark T. ; Gomez, Ricardo Santiago ; Jabado, Nada
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-11, Vol.9 (1), p.4572-8, Article 4572
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Spatiotemporal diversity in molecular and functional abnormalities in the mdx dystrophic brain
Author / Creator:Pomeroy, Joanna ; Borczyk, Malgorzata ; Kawalec, Maria ; Hajto, Jacek ; Carlson, Emma ; Svärd, Samuel ; Verma, Suraj ; Bareke, Eric ; Boratyńska-Jasińska, Anna ; Dymkowska, Dorota ; Mellado-Ibáñez, Alvaro ; Laight, David ; Zabłocki, Krzysztof ; Occhipinti, Annalisa ; Majewska, Loydie ; Angione, Claudio ; Majewski, Jacek ; Yegutkin, Gennady G ; Korostynski, Michal ; Zabłocka, Barbara ; Górecki, Dariusz C
Publisher:England: BioMed Central
Journal title:Molecular medicine (Cambridge, Mass.), 2025-03, Vol.31 (1), p.108-33, Article 108
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HSP90 inhibitors induce GPNMB cell-surface expression by modulating lysosomal positioning and sensitize breast cancer cells to glembatumumab vedotin
Author / Creator:Biondini, Marco ; Kiepas, Alex ; El-Houjeiri, Leeanna ; Annis, Matthew G. ; Hsu, Brian E. ; Fortier, Anne-Marie ; Morin, Geneviève ; Martina, José A. ; Sirois, Isabelle ; Aguilar-Mahecha, Adriana ; Gruosso, Tina ; McGuirk, Shawn ; Rose, April A. N. ; Tokat, Unal M. ; Johnson, Radia M. ; Sahin, Ozgur ; Bareke, Eric ; St-Pierre, Julie ; Park, Morag ; Basik, Mark ; Majewski, Jacek ; Puertollano, Rosa ; Pause, Arnim ; Huang, Sidong ; Keler, Tibor ; Siegel, Peter M.
Publisher:London: Nature Publishing Group UK
Journal title:Oncogene, 2022-03, Vol.41 (12), p.1701-1717
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Snrpb is required in murine neural crest cells for proper splicing and craniofacial morphogenesis
Author / Creator:Alam, Sabrina Shameen ; Kumar, Shruti ; Beauchamp, Marie-Claude ; Bareke, Eric ; Boucher, Alexia ; Nzirorera, Nadine ; Dong, Yanchen ; Padilla, Reinnier ; Zhang, Si Jing ; Majewski, Jacek ; Jerome-Majewska, Loydie A.
Publisher:Cambridge: The Company of Biologists Ltd
Journal title:Disease models & mechanisms, 2022-06, Vol.15 (6)
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ArticlesPeer ReviewedFull Text
Fatty acids derived from the probiotic Lacticaseibacillus rhamnosus HA-114 suppress age-dependent neurodegeneration
Author / Creator:Labarre, Audrey ; Guitard, Ericka ; Tossing, Gilles ; Forest, Anik ; Bareke, Eric ; Labrecque, Marjorie ; Tétreault, Martine ; Ruiz, Matthieu ; Alex Parker, J.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2022-12, Vol.5 (1), p.1340-1340, Article 1340
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ArticlesPeer ReviewedFull Text
Autosomal dominant cutis laxa with progeroid features due to a novel, de novo mutation in ALDH18A1
Author / Creator:Bhola, Priya T ; Hartley, Taila ; Bareke, Eric ; Boycott, Kym M ; Nikkel, Sarah M ; Dyment, David A
Publisher:England: Nature Publishing Group
Journal title:Journal of human genetics, 2017-06, Vol.62 (6), p.661-663
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ArticlesPeer ReviewedFull Text
A homozygous stop codon in HORMAD2 in a patient with recurrent digynic triploid miscarriage
Author / Creator:Liang, Manqi ; Suresh, Beena ; Bareke, Eric ; Choufani, Sanaa ; Jagadeesh, Sujatha ; Weksberg, Rosanna ; Majewski, Jacek ; Slim, Rima
Publisher:United States: John Wiley & Sons, Inc
Journal title:Molecular genetics & genomic medicine, 2024-02, Vol.12 (2), p.e2402-n/a
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ArticlesPeer ReviewedFull Text
Adaptation of a Bioinformatics Microarray Analysis Workflow for a Toxicogenomic Study in Rainbow Trout
Author / Creator:Depiereux, Sophie ; De Meulder, Bertrand ; Bareke, Eric ; Berger, Fabrice ; Le Gac, Florence ; Depiereux, Eric ; Kestemont, Patrick
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-07, Vol.10 (7), p.e0128598
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ArticlesPeer ReviewedFull Text
Novel homozygous nonsense mutation of MLIP and compensatory alternative splicing
Author / Creator:Mezreani, Jean ; Audet, Sébastien ; Martin, Florence ; Charbonneau, Jade ; Triassi, Valérie ; Bareke, Eric ; Laplante, Annie ; Karamchandani, Jason ; Massie, Rami ; Chalk, Colin H. ; O’Ferrall, Erin ; Tétreault, Martine
Publisher:London: Nature Publishing Group UK
Journal title:Npj genomic medicine, 2022-06, Vol.7 (1), p.36-36, Article 36
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ArticlesPeer ReviewedFull Text
Meta-analysis and gene set analysis of archived microarrays suggest implication of the spliceosome in metastatic and hypoxic phenotypes
Author / Creator:De Meulder, Bertrand ; Berger, Fabrice ; Bareke, Eric ; Depiereux, Sophie ; Michiels, Carine ; Depiereux, Eric
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-01, Vol.9 (1), p.e86699-e86699
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A benchmark for statistical microarray data analysis that preserves actual biological and technical variance
Author / Creator:De Hertogh, Benoît ; De Meulder, Bertrand ; Berger, Fabrice ; Pierre, Michael ; Bareke, Eric ; Gaigneaux, Anthoula ; Depiereux, Eric
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2010-01, Vol.11 (1), p.17-17, Article 17
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Meta-analysis of archived DNA microarrays identifies genes regulated by hypoxia and involved in a metastatic phenotype in cancer cells
Author / Creator:Pierre, Michael ; DeHertogh, Benoît ; Gaigneaux, Anthoula ; DeMeulder, Bertrand ; Berger, Fabrice ; Bareke, Eric ; Michiels, Carine ; Depiereux, Eric
Publisher:England: BioMed Central Ltd
Journal title:BMC cancer, 2010-04, Vol.10 (1), p.176-176, Article 176
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PathEx: a novel multi factors based datasets selector web tool
Author / Creator:Bareke, Eric ; Pierre, Michael ; Gaigneaux, Anthoula ; De Meulder, Bertrand ; Depiereux, Sophie ; Berger, Fabrice ; Habra, Naji ; Depiereux, Eric
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2010-10, Vol.11 (1), p.528-528, Article 528
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Functional analysis: evaluation of response intensities--tailoring ANOVA for lists of expression subsets
Author / Creator:Berger, Fabrice ; De Meulder, Bertrand ; Gaigneaux, Anthoula ; Depiereux, Sophie ; Bareke, Eric ; Pierre, Michael ; De Hertogh, Benoît ; Delorenzi, Mauro ; Depiereux, Eric
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2010-10, Vol.11 (1), p.510-510, Article 510
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Correction: PathEx: A novel multi factors based datasets selector web tool
Author / Creator:Bareke, Eric ; Pierre, Michael ; Gaigneaux, Anthoula ; De Meulder, Bertrand ; Depiereux, Sophie ; Berger, Fabrice ; Habra, Naji ; Depiereux, Eric
Publisher:London: BioMed Central
Journal title:BMC bioinformatics, 2010-11, Vol.11 (1), p.541-541
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ArticlesPeer ReviewedFull Text
gViz, a novel tool for the visualization of co-expression networks
Author / Creator:Helaers, Raphaël ; Bareke, Eric ; De Meulder, Bertrand ; Pierre, Michael ; Depiereux, Sophie ; Habra, Naji ; Depiereux, Eric
Publisher:England: BioMed Central Ltd
Journal title:BMC research notes, 2011-10, Vol.4 (1), p.452-452, Article 452
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ArticlesPeer ReviewedFull Text
ChIPbinner: an R package for analyzing broad histone marks binned in uniform windows from ChIP-Seq or CUT&RUN/TAG data
Author / Creator:Padilla, Reinnier ; Bareke, Eric ; Hu, Bo ; Majewski, Jacek
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2025-03, Vol.26 (1), p.89, Article 89
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Showing 1 to 20 of 42 results

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The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape

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Prognostic and predictive value of circulating tumor DNA during neoadjuvant chemotherapy for triple negative breast cancer

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Systematic perturbations of SETD2, NSD1, NSD2, NSD3, and ASH1L reveal their distinct contributions to H3K36 methylation

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TRPV4 and KRAS and FGFR1 gain-of-function mutations drive giant cell lesions of the jaw

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Spatiotemporal diversity in molecular and functional abnormalities in the mdx dystrophic brain

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HSP90 inhibitors induce GPNMB cell-surface expression by modulating lysosomal positioning and sensitize breast cancer cells to glembatumumab vedotin

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Snrpb is required in murine neural crest cells for proper splicing and craniofacial morphogenesis

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Fatty acids derived from the probiotic Lacticaseibacillus rhamnosus HA-114 suppress age-dependent neurodegeneration

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Autosomal dominant cutis laxa with progeroid features due to a novel, de novo mutation in ALDH18A1

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A homozygous stop codon in HORMAD2 in a patient with recurrent digynic triploid miscarriage

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Adaptation of a Bioinformatics Microarray Analysis Workflow for a Toxicogenomic Study in Rainbow Trout

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Novel homozygous nonsense mutation of MLIP and compensatory alternative splicing

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Meta-analysis and gene set analysis of archived microarrays suggest implication of the spliceosome in metastatic and hypoxic phenotypes

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A benchmark for statistical microarray data analysis that preserves actual biological and technical variance

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Meta-analysis of archived DNA microarrays identifies genes regulated by hypoxia and involved in a metastatic phenotype in cancer cells

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PathEx: a novel multi factors based datasets selector web tool

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Functional analysis: evaluation of response intensities--tailoring ANOVA for lists of expression subsets

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Correction: PathEx: A novel multi factors based datasets selector web tool

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gViz, a novel tool for the visualization of co-expression networks

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ChIPbinner: an R package for analyzing broad histone marks binned in uniform windows from ChIP-Seq or CUT&RUN/TAG data

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