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A decade of advances in transposon-insertion sequencing
Author / Creator:Cain, Amy K. ; Barquist, Lars ; Goodman, Andrew L. ; Paulsen, Ian T. ; Parkhill, Julian ; van Opijnen, Tim
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2020-09, Vol.21 (9), p.526-540
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A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron
Author / Creator:Ryan, Daniel ; Jenniches, Laura ; Reichardt, Sarah ; Barquist, Lars ; Westermann, Alexander J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-07, Vol.11 (1), p.3557-3557, Article 3557
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An amphipathic peptide with antibiotic activity against multidrug-resistant Gram-negative bacteria
Author / Creator:Elliott, Alysha G. ; Huang, Johnny X. ; Neve, Søren ; Zuegg, Johannes ; Edwards, Ingrid A. ; Cain, Amy K. ; Boinett, Christine J. ; Barquist, Lars ; Lundberg, Carina Vingsbo ; Steen, Jason ; Butler, Mark S. ; Mobli, Mehdi ; Porter, Kaela M. ; Blaskovich, Mark A. T. ; Lociuro, Sergio ; Strandh, Magnus ; Cooper, Matthew A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-06, Vol.11 (1), p.3184-13, Article 3184
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Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
Author / Creator:Feasey, Nicholas A ; Hadfield, James ; Keddy, Karen H ; Dallman, Timothy J ; Jacobs, Jan ; Deng, Xiangyu ; Wigley, Paul ; Barquist, Lars ; Langridge, Gemma C ; Feltwell, Theresa ; Harris, Simon R ; Mather, Alison E ; Fookes, Maria ; Aslett, Martin ; Msefula, Chisomo ; Kariuki, Samuel ; Maclennan, Calman A ; Onsare, Robert S ; Weill, François-Xavier ; Le Hello, Simon ; Smith, Anthony M ; McClelland, Michael ; Desai, Prerak ; Parry, Christopher M ; Cheesbrough, John ; French, Neil ; Campos, Josefina ; Chabalgoity, Jose A ; Betancor, Laura ; Hopkins, Katie L ; Nair, Satheesh ; Humphrey, Tom J ; Lunguya, Octavie ; Cogan, Tristan A ; Tapia, Milagritos D ; Sow, Samba O ; Tennant, Sharon M ; Bornstein, Kristin ; Levine, Myron M ; Lacharme-Lora, Lizeth ; Everett, Dean B ; Kingsley, Robert A ; Parkhill, Julian ; Heyderman, Robert S ; Dougan, Gordon ; Gordon, Melita A ; Thomson, Nicholas R
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2016-10, Vol.48 (10), p.1211-1217
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The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition
Author / Creator:Bauriedl, Saskia ; Gerovac, Milan ; Heidrich, Nadja ; Bischler, Thorsten ; Barquist, Lars ; Vogel, Jörg ; Schoen, Christoph
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-06, Vol.11 (1), p.2823-2823, Article 2823
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Plugging Small RNAs into the Network
Author / Creator:Barquist, Lars
Publisher:1752 N St., N.W., Washington, DC: American Society for Microbiology
Journal title:mSystems, 2020-06, Vol.5 (3)
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Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica
Author / Creator:Wheeler, Nicole E. ; Gardner, Paul P. ; Barquist, Lars
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2018-05, Vol.14 (5), p.e1007333-e1007333
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Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen
Author / Creator:Mika-Gospodorz, Bozena ; Giengkam, Suparat ; Westermann, Alexander J. ; Wongsantichon, Jantana ; Kion-Crosby, Willow ; Chuenklin, Suthida ; Wang, Loo Chien ; Sunyakumthorn, Piyanate ; Sobota, Radoslaw M. ; Subbian, Selvakumar ; Vogel, Jörg ; Barquist, Lars ; Salje, Jeanne
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-07, Vol.11 (1), p.3363-3363, Article 3363
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RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE
Author / Creator:Michaux, Charlotte ; Holmqvist, Erik ; Vasicek, Erin ; Sharan, Malvika ; Barquist, Lars ; Westermann, Alexander J. ; Gunn, John S. ; Vogel, Jörg
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2017-06, Vol.114 (26), p.6824-6829
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Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration
Author / Creator:Yu, Yanying ; Gawlitt, Sandra ; de Andrade e Sousa, Lisa Barros ; Merdivan, Erinc ; Piraud, Marie ; Beisel, Chase L. ; Barquist, Lars
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-01, Vol.25 (1), p.13-13, Article 13
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Patterns of genome evolution that have accompanied host adaptation in Salmonella
Author / Creator:Langridge, Gemma C. ; Fookes, Maria ; Connor, Thomas R. ; Feltwell, Theresa ; Feasey, Nicholas ; Parsons, Bryony N. ; Seth-Smith, Helena M. B. ; Barquist, Lars ; Stedman, Anna ; Humphrey, Tom ; Wigley, Paul ; Peters, Sarah E. ; Maskell, Duncan J. ; Corander, Jukka ; Chabalgoity, Jose A. ; Barrow, Paul ; Parkhill, Julian ; Dougan, Gordon ; Thomson, Nicholas R.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-01, Vol.112 (3), p.863-868
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The conserved noncoding RNA ModT coordinates growth and virulence in Clostridioides difficile
Author / Creator:Lenče, Tina ; Sulzer, Johannes ; Andress, Kilian ; Gribling-Burrer, Anne-Sophie ; Lamm-Schmidt, Vanessa ; Barquist, Lars ; Smyth, Redmond P. ; Faber, Franziska
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2024-12, Vol.22 (12), p.e3002948
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The global RNA-binding protein RbpB is a regulator of polysaccharide utilization in Bacteroides thetaiotaomicron
Author / Creator:Rüttiger, Ann-Sophie ; Ryan, Daniel ; Spiga, Luisella ; Lamm-Schmidt, Vanessa ; Prezza, Gianluca ; Reichardt, Sarah ; Langford, Madison ; Barquist, Lars ; Faber, Franziska ; Zhu, Wenhan ; Westermann, Alexander J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-01, Vol.16 (1), p.208-15, Article 208
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RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum
Author / Creator:Ponath, Falk ; Tawk, Caroline ; Zhu, Yan ; Barquist, Lars ; Faber, Franziska ; Vogel, Jörg
Publisher:London: Nature Publishing Group UK
Journal title:Nature microbiology, 2021-08, Vol.6 (8), p.1007-1020
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ArticlesPeer ReviewedFull Text
A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria
Author / Creator:Sullivan, Geraldine J. ; Barquist, Lars ; Cain, Amy K.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2024-04, Vol.9 (4), p.e0066523-e0066523
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Vector-borne Trypanosoma brucei parasites develop in artificial human skin and persist as skin tissue forms
Author / Creator:Reuter, Christian ; Hauf, Laura ; Imdahl, Fabian ; Sen, Rituparno ; Vafadarnejad, Ehsan ; Fey, Philipp ; Finger, Tamara ; Jones, Nicola G. ; Walles, Heike ; Barquist, Lars ; Saliba, Antoine-Emmanuel ; Groeber-Becker, Florian ; Engstler, Markus
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-11, Vol.14 (1), p.7660-7660, Article 7660
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Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress
Author / Creator:Schumacher, Kilian ; Gelhausen, Rick ; Kion-Crosby, Willow ; Barquist, Lars ; Backofen, Rolf ; Jung, Kirsten
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2023-12, Vol.8 (6), p.e0103723
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Parallel independent evolution of pathogenicity within the genus Yersinia
Author / Creator:Reuter, Sandra ; Connor, Thomas R. ; Barquist, Lars ; Walker, Danielle ; Feltwell, Theresa ; Harris, Simon R. ; Fookes, Maria ; Hall, Miquette E. ; Petty, Nicola K. ; Fuchs, Thilo M. ; Corander, Jukka ; Dufour, Muriel ; Ringwood, Tamara ; Savin, Cyril ; Bouchier, Christiane ; Martin, Liliane ; Miettinen, Minna ; Shubin, Mikhail ; Riehm, Julia M. ; Laukkanen-Ninios, Riikka ; Sihvonen, Leila M. ; Siitonen, Anja ; Skurnik, Mikael ; Falcão, Juliana Pfrimer ; Fukushima, Hiroshi ; Scholz, Holger C. ; Prentice, Michael B. ; Wren, Brendan W. ; Parkhill, Julian ; Carniel, Elisabeth ; Achtman, Mark ; McNally, Alan ; Thomson, Nicholas R.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-05, Vol.111 (18), p.6768-6773
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Ushering in a new era of single-cell transcriptomics in bacteria
Author / Creator:Homberger, Christina ; Barquist, Lars ; Vogel, Jörg
Publisher:England: Oxford University Press
Journal title:microLife, 2022, Vol.3, p.uqac020-uqac020
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Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa
Author / Creator:Okoro, Chinyere K. ; Barquist, Lars ; Connor, Thomas R. ; Harris, Simon R. ; Clare, Simon ; Stevens, Mark P. ; Arends, Mark J. ; Hale, Christine ; Kane, Leanne ; Pickard, Derek J. ; Hill, Jennifer ; Harcourt, Katherine ; Parkhill, Julian ; Dougan, Gordon ; Kingsley, Robert A.
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2015-03, Vol.9 (3), p.e0003611-e0003611
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Showing 1 to 20 of 71 results

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A decade of advances in transposon-insertion sequencing

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A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron

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An amphipathic peptide with antibiotic activity against multidrug-resistant Gram-negative bacteria

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Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

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The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition

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Plugging Small RNAs into the Network

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Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica

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Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen

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RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE

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Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration

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Patterns of genome evolution that have accompanied host adaptation in Salmonella

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The conserved noncoding RNA ModT coordinates growth and virulence in Clostridioides difficile

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The global RNA-binding protein RbpB is a regulator of polysaccharide utilization in Bacteroides thetaiotaomicron

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RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum

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A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria

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Vector-borne Trypanosoma brucei parasites develop in artificial human skin and persist as skin tissue forms

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Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress

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Parallel independent evolution of pathogenicity within the genus Yersinia

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Ushering in a new era of single-cell transcriptomics in bacteria

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Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa

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