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Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine
Author / Creator:Booth, Michael J ; Ost, Tobias W B ; Beraldi, Dario ; Bell, Neil M ; Branco, Miguel R ; Reik, Wolf ; Balasubramanian, Shankar
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2013-10, Vol.8 (10), p.1841-1851
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RNA cytosine methyltransferase Nsun3 regulates embryonic stem cell differentiation by promoting mitochondrial activity
Author / Creator:Trixl, Lukas ; Amort, Thomas ; Wille, Alexandra ; Zinni, Manuela ; Ebner, Susanne ; Hechenberger, Clara ; Eichin, Felix ; Gabriel, Hanna ; Schoberleitner, Ines ; Huang, Anming ; Piatti, Paolo ; Nat, Roxana ; Troppmair, Jakob ; Lusser, Alexandra
Journal title:Cellular and molecular life sciences : CMLS, 2018-04, Vol.75 (8), p.1483-1497
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Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha
Author / Creator:Schmid, Marc W ; Giraldo-Fonseca, Alejandro ; Rövekamp, Moritz ; Smetanin, Dmitry ; Bowman, John L ; Grossniklaus, Ueli
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-01, Vol.19 (1), p.9-9, Article 9
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Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)
Author / Creator:Clark, Stephen J ; Smallwood, Sébastien A ; Lee, Heather J ; Krueger, Felix ; Reik, Wolf ; Kelsey, Gavin
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2017-03, Vol.12 (3), p.534-547
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Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
Author / Creator:Smallwood, Sébastien A ; Lee, Heather J ; Angermueller, Christof ; Krueger, Felix ; Saadeh, Heba ; Peat, Julian ; Andrews, Simon R ; Stegle, Oliver ; Reik, Wolf ; Kelsey, Gavin
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2014-08, Vol.11 (8), p.817-820
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Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing
Author / Creator:Ziller, Michael J ; Hansen, Kasper D ; Meissner, Alexander ; Aryee, Martin J
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2015-03, Vol.12 (3), p.230-232
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The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing
Author / Creator:Huang, Yun ; Pastor, William A ; Shen, Yinghua ; Tahiliani, Mamta ; Liu, David R ; Rao, Anjana
Publisher:United States: Public Library of Science
Journal title:PloS one, 2010-01, Vol.5 (1), p.e8888-e8888
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Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine
Author / Creator:Yu, Miao ; Hon, Gary C ; Szulwach, Keith E ; Song, Chun-Xiao ; Jin, Peng ; Ren, Bing ; He, Chuan
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2012-12, Vol.7 (12), p.2159-2170
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BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
Author / Creator:Guo, Weilong ; Fiziev, Petko ; Yan, Weihong ; Cokus, Shawn ; Sun, Xueguang ; Zhang, Michael Q ; Chen, Pao-Yang ; Pellegrini, Matteo
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2013-11, Vol.14 (1), p.774-774, Article 774
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epiGBS: reference-free reduced representation bisulfite sequencing
Author / Creator:van Gurp, Thomas P ; Wagemaker, Niels C A M ; Wouters, Björn ; Vergeer, Philippine ; Ouborg, Joop N J ; Verhoeven, Koen J F
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2016-04, Vol.13 (4), p.322-324
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ArticlesPeer ReviewedFull Text
Tagmentation-based whole-genome bisulfite sequencing
Author / Creator:Wang, Qi ; Gu, Lei ; Adey, Andrew ; Radlwimmer, Bernhard ; Wang, Wei ; Hovestadt, Volker ; Bähr, Marion ; Wolf, Stephan ; Shendure, Jay ; Eils, Roland ; Plass, Christoph ; Weichenhan, Dieter
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2013-10, Vol.8 (10), p.2022-2032
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Extended-representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells
Author / Creator:Shareef, Sarah J. ; Bevill, Samantha M. ; Raman, Ayush T. ; Aryee, Martin J. ; van Galen, Peter ; Hovestadt, Volker ; Bernstein, Bradley E.
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2021-09, Vol.39 (9), p.1086-1094
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BS Seeker: precise mapping for bisulfite sequencing
Author / Creator:Chen, Pao-Yang ; Cokus, Shawn J ; Pellegrini, Matteo
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2010-04, Vol.11 (1), p.203-203, Article 203
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DNA methylome analysis using short bisulfite sequencing data
Author / Creator:Krueger, Felix ; Kreck, Benjamin ; Franke, Andre ; Andrews, Simon R
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2012-02, Vol.9 (2), p.145-151
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BS-Seeker3: ultrafast pipeline for bisulfite sequencing
Author / Creator:Huang, Kevin Yu Yuan ; Huang, Yan-Jiun ; Chen, Pao-Yang
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2018-04, Vol.19 (1), p.111-111, Article 111
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Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data
Author / Creator:Olova, Nelly ; Krueger, Felix ; Andrews, Simon ; Oxley, David ; Berrens, Rebecca V ; Branco, Miguel R ; Reik, Wolf
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-03, Vol.19 (1), p.33-33, Article 33
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Identification of Smoking-Associated Differentially Methylated Regions Using Reduced Representation Bisulfite Sequencing and Cell type-Specific Enhancer Activation and Gene Expression
Author / Creator:Wan, Ma ; Bennett, Brian D ; Pittman, Gary S ; Campbell, Michelle R ; Reynolds, Lindsay M ; Porter, Devin K ; Crowl, Christopher L ; Wang, Xuting ; Su, Dan ; Englert, Neal A ; Thompson, Isabel J ; Liu, Yongmei ; Bell, Douglas A
Publisher:United States: National Institute of Environmental Health Sciences
Journal title:Environmental health perspectives, 2018-04, Vol.126 (4), p.047015
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Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
Author / Creator:Gu, Hongcang ; Smith, Zachary D ; Bock, Christoph ; Boyle, Patrick ; Gnirke, Andreas ; Meissner, Alexander
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2011-04, Vol.6 (4), p.468-481
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MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing
Author / Creator:Urich, Mark A ; Nery, Joseph R ; Lister, Ryan ; Schmitz, Robert J ; Ecker, Joseph R
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2015-03, Vol.10 (3), p.475-483
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Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing
Author / Creator:Chan, K. C. Allen ; Jiang, Peiyong ; Chan, Carol W. M. ; Sun, Kun ; Wong, John ; Hui, Edwin P. ; Chan, Stephen L. ; Chan, Wing Cheong ; Hui, David S. C. ; Ng, Simon S. M. ; Chan, Henry L. Y. ; Wong, Cesar S. C. ; Ma, Brigette B. Y. ; Chan, Anthony T. C. ; Lai, Paul B. S. ; Sun, Hao ; Chiu, Rossa W. K. ; Lo, Y. M. Dennis
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-11, Vol.110 (47), p.18761-18768
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Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine

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RNA cytosine methyltransferase Nsun3 regulates embryonic stem cell differentiation by promoting mitochondrial activity

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Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha

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Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)

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Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

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Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing

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The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing

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Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine

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BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data

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epiGBS: reference-free reduced representation bisulfite sequencing

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Tagmentation-based whole-genome bisulfite sequencing

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Extended-representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells

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BS Seeker: precise mapping for bisulfite sequencing

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DNA methylome analysis using short bisulfite sequencing data

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BS-Seeker3: ultrafast pipeline for bisulfite sequencing

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Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

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Identification of Smoking-Associated Differentially Methylated Regions Using Reduced Representation Bisulfite Sequencing and Cell type-Specific Enhancer Activation and Gene Expression

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Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling

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MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

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Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing

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