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ArticlesPeer ReviewedFull Text
All of gene expression (AOE): An integrated index for public gene expression databases
Author / Creator:Bono, Hidemasa
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-01, Vol.15 (1), p.e0227076-e0227076
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Meta-Analysis of Oxidative Transcriptomes in Insects
Author / Creator:Bono, Hidemasa
Publisher:Switzerland: MDPI AG
Journal title:Antioxidants, 2021-02, Vol.10 (3), p.345
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Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
Author / Creator:Matsuo, Yoshiyuki ; Komiya, Shinnosuke ; Yasumizu, Yoshiaki ; Yasuoka, Yuki ; Mizushima, Katsura ; Takagi, Tomohisa ; Kryukov, Kirill ; Fukuda, Aisaku ; Morimoto, Yoshiharu ; Naito, Yuji ; Okada, Hidetaka ; Bono, Hidemasa ; Nakagawa, So ; Hirota, Kiichi
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2021-01, Vol.21 (1), p.35-35, Article 35
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Meta-Analysis of RNA Sequencing Data of Arabidopsis and Rice under Hypoxia
Author / Creator:Tamura, Keita ; Bono, Hidemasa
Publisher:Switzerland: MDPI AG
Journal title:Life (Basel, Switzerland), 2022-07, Vol.12 (7), p.1079
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Optimization of Mapping Tools and Investigation of Ribosomal RNA Influence for Data-Driven Gene Expression Analysis in Complex Microbiomes
Author / Creator:Mameda, Ryo ; Bono, Hidemasa
Publisher:Switzerland: MDPI AG
Journal title:Microorganisms (Basel), 2025-04, Vol.13 (5), p.995
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Transcriptional Signatures of Domestication Revealed through Meta-Analysis of Pig, Chicken, Wild Boar, and Red Junglefowl Gene Expression Data
Author / Creator:Uno, Motoki ; Bono, Hidemasa
Publisher:Switzerland: MDPI AG
Journal title:Animals (Basel), 2024-07, Vol.14 (13), p.1998
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Inhibiting SARS-CoV-2 infection in vitro by suppressing its receptor, angiotensin-converting enzyme 2, via aryl-hydrocarbon receptor signal
Author / Creator:Tanimoto, Keiji ; Hirota, Kiichi ; Fukazawa, Takahiro ; Matsuo, Yoshiyuki ; Nomura, Toshihito ; Tanuza, Nazmul ; Hirohashi, Nobuyuki ; Bono, Hidemasa ; Sakaguchi, Takemasa
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-08, Vol.11 (1), p.1-12, Article 16629
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PtWAVE: a high-sensitive deconvolution software of sequencing trace for the detection of large indels in genome editing
Author / Creator:Nakamae, Kazuki ; Ide, Saya ; Ohnuki, Nagaki ; Nakagawa, Yoshiko ; Okuhara, Keisuke ; Bono, Hidemasa
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2025-04, Vol.26 (1), p.114-17, Article 114
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Meta-Analysis of Hypoxic Transcriptomes from Public Databases
Author / Creator:Bono, Hidemasa ; Hirota, Kiichi
Publisher:Switzerland: MDPI AG
Journal title:Biomedicines, 2020-01, Vol.8 (1), p.10
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A systematic exploration of unexploited genes for oxidative stress in Parkinson’s disease
Author / Creator:Suzuki, Takayuki ; Bono, Hidemasa
Publisher:London: Nature Publishing Group UK
Journal title:NPJ Parkinson's Disease, 2024-08, Vol.10 (1), p.160-10, Article 160
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Multi-Omic Meta-Analysis of Transcriptomes and the Bibliome Uncovers Novel Hypoxia-Inducible Genes
Author / Creator:Ono, Yoko ; Bono, Hidemasa
Publisher:Basel: MDPI AG
Journal title:Biomedicines, 2021-05, Vol.9 (5), p.582
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Prediction of sex-determination mechanisms in avian primordial germ cells using RNA-seq analysis
Author / Creator:Ichikawa, Kennosuke ; Nakamura, Yoshiaki ; Bono, Hidemasa ; Ezaki, Ryo ; Matsuzaki, Mei ; Horiuchi, Hiroyuki
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-08, Vol.12 (1), p.13528-13528, Article 13528
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Genome-Wide Search for Gene Mutations Likely Conferring Insecticide Resistance in the Common Bed Bug, Cimex lectularius
Author / Creator:Toga, Kouhei ; Kimoto, Fumiko ; Fujii, Hiroki ; Bono, Hidemasa
Publisher:Switzerland: MDPI AG
Journal title:Insects (Basel, Switzerland), 2024-10, Vol.15 (10), p.737
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ArticlesPeer ReviewedFull Text
Systematic Functional Annotation Workflow for Insects
Author / Creator:Bono, Hidemasa ; Sakamoto, Takuma ; Kasukawa, Takeya ; Tabunoki, Hiroko
Publisher:Basel: MDPI AG
Journal title:Insects (Basel, Switzerland), 2022-06, Vol.13 (7), p.586
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HIF-1-mediated suppression of mitochondria electron transport chain function confers resistance to lidocaine-induced cell death
Author / Creator:Okamoto, Akihisa ; Sumi, Chisato ; Tanaka, Hiromasa ; Kusunoki, Munenori ; Iwai, Teppei ; Nishi, Kenichiro ; Matsuo, Yoshiyuki ; Harada, Hiroshi ; Takenaga, Keizo ; Bono, Hidemasa ; Hirota, Kiichi
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-06, Vol.7 (1), p.3816-14, Article 3816
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ArticlesPeer ReviewedFull Text
Superoxide dismutase down-regulation and the oxidative stress is required to initiate pupation in Bombyx mori
Author / Creator:Nojima, Yosui ; Bono, Hidemasa ; Yokoyama, Takeshi ; Iwabuchi, Kikuo ; Sato, Ryoichi ; Arai, Katsuhiko ; Tabunoki, Hiroko
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-10, Vol.9 (1), p.14693-13, Article 14693
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Reference Transcriptome Data in Silkworm Bombyx mori
Author / Creator:Yokoi, Kakeru ; Tsubota, Takuya ; Jouraku, Akiya ; Sezutsu, Hideki ; Bono, Hidemasa
Publisher:Switzerland: MDPI AG
Journal title:Insects (Basel, Switzerland), 2021-06, Vol.12 (6), p.519
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An extract from the frass of swallowtail butterfly (Papilio machaon) larvae inhibits HCT116 colon cancer cell proliferation but not other cancer cell types
Author / Creator:Nakano, Miho ; Sakamoto, Takuma ; Kitano, Yoshikazu ; Bono, Hidemasa ; Simpson, Richard J. ; Tabunoki, Hiroko
Publisher:London: BioMed Central Ltd
Journal title:BMC genomics, 2023-12, Vol.24 (1), p.1-735, Article 735
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Meta-Analysis of the Public RNA-Seq Data of the Western Honeybee Apis mellifera to Construct Reference Transcriptome Data
Author / Creator:Yokoi, Kakeru ; Wakamiya, Takeshi ; Bono, Hidemasa
Publisher:Basel: MDPI AG
Journal title:Insects (Basel, Switzerland), 2022-10, Vol.13 (10), p.931
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RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes
Author / Creator:Ono, Hiromasa ; Ogasawara, Osamu ; Okubo, Kosaku ; Bono, Hidemasa
Publisher:London: Nature Publishing Group UK
Journal title:Scientific data, 2017-08, Vol.4 (1), p.170105-170105, Article 170105
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Showing 1 to 20 of 95 results

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All of gene expression (AOE): An integrated index for public gene expression databases

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Meta-Analysis of Oxidative Transcriptomes in Insects

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Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution

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Meta-Analysis of RNA Sequencing Data of Arabidopsis and Rice under Hypoxia

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Optimization of Mapping Tools and Investigation of Ribosomal RNA Influence for Data-Driven Gene Expression Analysis in Complex Microbiomes

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Transcriptional Signatures of Domestication Revealed through Meta-Analysis of Pig, Chicken, Wild Boar, and Red Junglefowl Gene Expression Data

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Inhibiting SARS-CoV-2 infection in vitro by suppressing its receptor, angiotensin-converting enzyme 2, via aryl-hydrocarbon receptor signal

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PtWAVE: a high-sensitive deconvolution software of sequencing trace for the detection of large indels in genome editing

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Meta-Analysis of Hypoxic Transcriptomes from Public Databases

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A systematic exploration of unexploited genes for oxidative stress in Parkinson’s disease

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Multi-Omic Meta-Analysis of Transcriptomes and the Bibliome Uncovers Novel Hypoxia-Inducible Genes

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Prediction of sex-determination mechanisms in avian primordial germ cells using RNA-seq analysis

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Genome-Wide Search for Gene Mutations Likely Conferring Insecticide Resistance in the Common Bed Bug, Cimex lectularius

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Systematic Functional Annotation Workflow for Insects

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HIF-1-mediated suppression of mitochondria electron transport chain function confers resistance to lidocaine-induced cell death

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Superoxide dismutase down-regulation and the oxidative stress is required to initiate pupation in Bombyx mori

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Reference Transcriptome Data in Silkworm Bombyx mori

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An extract from the frass of swallowtail butterfly (Papilio machaon) larvae inhibits HCT116 colon cancer cell proliferation but not other cancer cell types

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Meta-Analysis of the Public RNA-Seq Data of the Western Honeybee Apis mellifera to Construct Reference Transcriptome Data

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RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes

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