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Bumgarner, Roger E
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: BAY-BUP, 2022, p.1517-1517
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Bumgarner, Roger E
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: BEA-BUD, 2021, p.1508-1508
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ArticlesPeer ReviewedFull Text
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
Author / Creator:Kittichotirat, Weerayuth ; Bumgarner, Roger E. ; Asikainen, Sirkka ; Chen, Casey
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-07, Vol.6 (7), p.e22420
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Stitching together Multiple Data Dimensions Reveals Interacting Metabolomic and Transcriptomic Networks That Modulate Cell Regulation
Author / Creator:Zhu, Jun ; Sova, Pavel ; Xu, Qiuwei ; Dombek, Kenneth M. ; Xu, Ethan Y. ; Vu, Heather ; Tu, Zhidong ; Brem, Rachel B. ; Bumgarner, Roger E. ; Schadt, Eric E.
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2012-04, Vol.10 (4), p.e1001301
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ArticlesPeer ReviewedFull Text
Variable Nitrogen Fixation in Wild Populus
Author / Creator:Doty, Sharon L. ; Sher, Andrew W. ; Fleck, Neil D. ; Khorasani, Mahsa ; Bumgarner, Roger E. ; Khan, Zareen ; Ko, Andrew W. K. ; Kim, Soo-Hyung ; DeLuca, Thomas H.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-05, Vol.11 (5), p.e0155979
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Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks
Author / Creator:Zhu, Jun ; Zhang, Bin ; Smith, Erin N ; Drees, Becky ; Brem, Rachel B ; Kruglyak, Leonid ; Bumgarner, Roger E ; Schadt, Eric E
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2008-07, Vol.40 (7), p.854-861
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Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria
Author / Creator:Srinivasan, Sujatha ; Hoffman, Noah G. ; Morgan, Martin T. ; Matsen, Frederick A. ; Fiedler, Tina L. ; Hall, Robert W. ; Ross, Frederick J. ; McCoy, Connor O. ; Bumgarner, Roger ; Marrazzo, Jeanne M. ; Fredricks, David N.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-06, Vol.7 (6), p.e37818
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ArticlesPeer ReviewedFull Text
Direct multiplexed measurement of gene expression with color-coded probe pairs
Author / Creator:Geiss, Gary K ; Bumgarner, Roger E ; Birditt, Brian ; Dahl, Timothy ; Dowidar, Naeem ; Dunaway, Dwayne L ; Fell, H Perry ; Ferree, Sean ; George, Renee D ; Grogan, Tammy ; James, Jeffrey J ; Maysuria, Malini ; Mitton, Jeffrey D ; Oliveri, Paola ; Osborn, Jennifer L ; Peng, Tao ; Ratcliffe, Amber L ; Webster, Philippa J ; Davidson, Eric H ; Hood, Leroy ; Dimitrov, Krassen
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2008-03, Vol.26 (3), p.317-325
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ArticlesPeer ReviewedFull Text
Genomic Islands Shape the Genetic Background of Both JP2 and Non-JP2 Aggregatibacter actinomycetemcomitans
Author / Creator:Kittichotirat, Weerayuth ; Bumgarner, Roger E. ; Chen, Casey
Publisher:Basel: MDPI AG
Journal title:Pathogens (Basel), 2022-09, Vol.11 (9), p.1037
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ArticlesPeer ReviewedFull Text
MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis
Author / Creator:Chu, Vu T ; Gottardo, Raphael ; Raftery, Adrian E ; Bumgarner, Roger E ; Yeung, Ka Yee
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2008-07, Vol.9 (7), p.R118-1980, Article R118
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ArticlesPeer ReviewedFull Text
Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection
Author / Creator:Iyer, Shyamala ; Casey, Eleanor ; Bouzek, Heather ; Kim, Moon ; Deng, Wenjie ; Larsen, Brendan B. ; Zhao, Hong ; Bumgarner, Roger E. ; Rolland, Morgane ; Mullins, James I.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-08, Vol.10 (8), p.e0135903
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ArticlesPeer ReviewedFull Text
Construction of regulatory networks using expression time-series data of a genotyped population
Author / Creator:Yeung, Ka Yee ; Dombek, Kenneth M ; Lo, Kenneth ; Mittler, John E ; Zhu, Jun ; Schadt, Eric E ; Bumgarner, Roger E ; Raftery, Adrian E
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2011-11, Vol.108 (48), p.19436-19441
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ArticlesPeer ReviewedFull Text
Temporal genetic association and temporal genetic causality methods for dissecting complex networks
Author / Creator:Lin, Luan ; Chen, Quan ; Hirsch, Jeanne P ; Yoo, Seungyeul ; Yeung, Kayee ; Bumgarner, Roger E ; Tu, Zhidong ; Schadt, Eric E ; Zhu, Jun
Publisher:London: Nature Publishing Group
Journal title:Nature communications, 2018-09, Vol.9, p.1-15
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ArticlesPeer ReviewedFull Text
Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data
Author / Creator:Annest, Amalia ; Bumgarner, Roger E ; Raftery, Adrian E ; Yeung, Ka Yee
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2009-02, Vol.10 (1), p.72-72, Article 72
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ArticlesPeer ReviewedFull Text
Clustering gene-expression data with repeated measurements
Author / Creator:Yeung, Ka Yee ; Medvedovic, Mario ; Bumgarner, Roger E
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2003-01, Vol.4 (5), p.R34-544, Article R34
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ArticlesPeer ReviewedFull Text
Human Serum-Specific Activation of Alternative Sigma Factors, the Stress Responders in Aggregatibacter actinomycetemcomitans
Author / Creator:Tang-Siegel, Gaoyan ; Bumgarner, Roger ; Ruiz, Teresa ; Kittichotirat, Weerayuth ; Chen, Weizhen ; Chen, Casey
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-08, Vol.11 (8), p.e0160018
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A three-way comparative genomic analysis of Mannheimia haemolytica isolates
Author / Creator:Lawrence, Paulraj K ; Kittichotirat, Weerayuth ; McDermott, Jason E ; Bumgarner, Roger E
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2010-10, Vol.11 (1), p.535-535, Article 535
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ArticlesPeer ReviewedFull Text
Gene expression in Pseudomonas aeruginosa biofilms
Author / Creator:Whiteley, Marvin ; Bangera, M. Gita ; Bumgarner, Roger E. ; Parsek, Matthew R. ; Teitzel, Gail M. ; Lory, Stephen ; Greenberg, E. P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2001-10, Vol.413 (6858), p.860-864
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ArticlesPeer ReviewedFull Text
Integrating external biological knowledge in the construction of regulatory networks from time-series expression data
Author / Creator:Lo, Kenneth ; Raftery, Adrian E ; Dombek, Kenneth M ; Zhu, Jun ; Schadt, Eric E ; Bumgarner, Roger E ; Yeung, Ka Yee
Publisher:England: BioMed Central
Journal title:BMC systems biology, 2012-08, Vol.6 (1), p.101-101, Article 101
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The genome of the domesticated apple (Malus × domestica Borkh.)
Author / Creator:Velasco, Riccardo ; Zharkikh, Andrey ; Affourtit, Jason ; Dhingra, Amit ; Cestaro, Alessandro ; Kalyanaraman, Ananth ; Fontana, Paolo ; Bhatnagar, Satish K ; Troggio, Michela ; Pruss, Dmitry ; Salvi, Silvio ; Pindo, Massimo ; Baldi, Paolo ; Castelletti, Sara ; Cavaiuolo, Marina ; Coppola, Giuseppina ; Costa, Fabrizio ; Cova, Valentina ; Dal Ri, Antonio ; Goremykin, Vadim ; Komjanc, Matteo ; Longhi, Sara ; Magnago, Pierluigi ; Malacarne, Giulia ; Malnoy, Mickael ; Micheletti, Diego ; Moretto, Marco ; Perazzolli, Michele ; Si-Ammour, Azeddine ; Vezzulli, Silvia ; Zini, Elena ; Eldredge, Glenn ; Fitzgerald, Lisa M ; Gutin, Natalia ; Lanchbury, Jerry ; Macalma, Teresita ; Mitchell, Jeff T ; Reid, Julia ; Wardell, Bryan ; Kodira, Chinnappa ; Chen, Zhoutao ; Desany, Brian ; Niazi, Faheem ; Palmer, Melinda ; Koepke, Tyson ; Jiwan, Derick ; Schaeffer, Scott ; Krishnan, Vandhana ; Wu, Changjun ; Chu, Vu T ; King, Stephen T ; Vick, Jessica ; Tao, Quanzhou ; Mraz, Amy ; Stormo, Aimee ; Stormo, Keith ; Bogden, Robert ; Ederle, Davide ; Stella, Alessandra ; Vecchietti, Alberto ; Kater, Martin M ; Masiero, Simona ; Lasserre, Pauline ; Lespinasse, Yves ; Allan, Andrew C ; Bus, Vincent ; Chagné, David ; Crowhurst, Ross N ; Gleave, Andrew P ; Lavezzo, Enrico ; Fawcett, Jeffrey A ; Proost, Sebastian ; Rouzé, Pierre ; Sterck, Lieven ; Toppo, Stefano ; Lazzari, Barbara ; Hellens, Roger P ; Durel, Charles-Eric ; Gutin, Alexander ; Bumgarner, Roger E ; Gardiner, Susan E ; Skolnick, Mark ; Egholm, Michael ; Van de Peer, Yves ; Salamini, Francesco ; Viola, Roberto
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2010-10, Vol.42 (10), p.833-839
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Bumgarner, Roger E

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Bumgarner, Roger E

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Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis

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Stitching together Multiple Data Dimensions Reveals Interacting Metabolomic and Transcriptomic Networks That Modulate Cell Regulation

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Variable Nitrogen Fixation in Wild Populus

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Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

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Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria

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Direct multiplexed measurement of gene expression with color-coded probe pairs

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Genomic Islands Shape the Genetic Background of Both JP2 and Non-JP2 Aggregatibacter actinomycetemcomitans

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MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis

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Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection

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Construction of regulatory networks using expression time-series data of a genotyped population

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Temporal genetic association and temporal genetic causality methods for dissecting complex networks

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Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data

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Clustering gene-expression data with repeated measurements

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Human Serum-Specific Activation of Alternative Sigma Factors, the Stress Responders in Aggregatibacter actinomycetemcomitans

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A three-way comparative genomic analysis of Mannheimia haemolytica isolates

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Gene expression in Pseudomonas aeruginosa biofilms

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Integrating external biological knowledge in the construction of regulatory networks from time-series expression data

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The genome of the domesticated apple (Malus × domestica Borkh.)

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