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ArticlesPeer ReviewedFull Text
Impact of transposable elements on genome structure and evolution in bread wheat
Author / Creator:Wicker, Thomas ; Gundlach, Heidrun ; Spannagl, Manuel ; Uauy, Cristobal ; Borrill, Philippa ; Ramírez-González, Ricardo H ; De Oliveira, Romain ; Mayer, Klaus F X ; Paux, Etienne ; Choulet, Frédéric
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-08, Vol.19 (1), p.103-103, Article 103
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Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
Author / Creator:Alaux, Michael ; Rogers, Jane ; Letellier, Thomas ; Flores, Raphaël ; Alfama, Françoise ; Pommier, Cyril ; Mohellibi, Nacer ; Durand, Sophie ; Kimmel, Erik ; Michotey, Célia ; Guerche, Claire ; Loaec, Mikaël ; Lainé, Mathilde ; Steinbach, Delphine ; Choulet, Frédéric ; Rimbert, Hélène ; Leroy, Philippe ; Guilhot, Nicolas ; Salse, Jérôme ; Feuillet, Catherine ; Paux, Etienne ; Eversole, Kellye ; Adam-Blondon, Anne-Françoise ; Quesneville, Hadi
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-08, Vol.19 (1), p.111-111, Article 111
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High throughput SNP discovery and genotyping in hexaploid wheat
Author / Creator:Rimbert, Hélène ; Darrier, Benoît ; Navarro, Julien ; Kitt, Jonathan ; Choulet, Frédéric ; Leveugle, Magalie ; Duarte, Jorge ; Rivière, Nathalie ; Eversole, Kellye ; Le Gouis, Jacques ; Davassi, Alessandro ; Balfourier, François ; Le Paslier, Marie-Christine ; Berard, Aurélie ; Brunel, Dominique ; Feuillet, Catherine ; Poncet, Charles ; Sourdille, Pierre ; Paux, Etienne
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-01, Vol.13 (1), p.e0186329-e0186329
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Structural and functional partitioning of bread wheat chromosome 3B
Author / Creator:Choulet, Frédéric ; Alberti, Adriana ; Theil, Sébastien ; Glover, Natasha ; Barbe, Valérie ; Daron, Josquin ; Pingault, Lise ; Sourdille, Pierre ; Couloux, Arnaud ; Paux, Etienne ; Leroy, Philippe ; Mangenot, Sophie ; Guilhot, Nicolas ; Le Gouis, Jacques ; Balfourier, Francois ; Alaux, Michael ; Jamilloux, Véronique ; Poulain, Julie ; Durand, Céline ; Bellec, Arnaud ; Gaspin, Christine ; Safar, Jan ; Dolezel, Jaroslav ; Rogers, Jane ; Vandepoele, Klaas ; Aury, Jean-Marc ; Mayer, Klaus ; Berges, Hélène ; Quesneville, Hadi ; Wincker, Patrick ; Feuillet, Catherine
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2014-07, Vol.345 (6194), p.287-287
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Physical Map of the 1-Gigabase Bread Wheat Chromosome 3B
Author / Creator:Paux, Etienne ; Sourdille, Pierre ; Salse, Jérôme ; Saintenac, Cyrille ; Choulet, Frédéric ; Leroy, Philippe ; Korol, Abraham ; Michalak, Monika ; Kianian, Shahryar ; Spielmeyer, Wolfgang ; Lagudah, Evans ; Somers, Daryl ; Kilian, Andrzej ; Alaux, Michael ; Vautrin, Sonia ; Bergès, Hélène ; Eversole, Kellye ; Appels, Rudi ; Safar, Jan ; Simkova, Hana ; Dolezel, Jaroslav ; Bernard, Michel ; Feuillet, Catherine
Publisher:Washington, DC: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2008-10, Vol.322 (5898), p.101-104
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Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome
Author / Creator:Pingault, Lise ; Choulet, Frédéric ; Alberti, Adriana ; Glover, Natasha ; Wincker, Patrick ; Feuillet, Catherine ; Paux, Etienne
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2015-02, Vol.16 (1), p.29-29
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High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism
Author / Creator:Darrier, Benoit ; Rimbert, Hélène ; Balfourier, François ; Pingault, Lise ; Josselin, Ambre-Aurore ; Servin, Bertrand ; Navarro, Julien ; Choulet, Frédéric ; Paux, Etienne ; Sourdille, Pierre
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2017-07, Vol.206 (3), p.1373-1388
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ArticlesPeer ReviewedFull Text
Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces
Author / Creator:Choulet, Frédéric ; Wicker, Thomas ; Rustenholz, Camille ; Paux, Etienne ; Salse, Jérome ; Leroy, Philippe ; Schlub, Stéphane ; Le Paslier, Marie-Christine ; Magdelenat, Ghislaine ; Gonthier, Catherine ; Couloux, Arnaud ; Budak, Hikmet ; Breen, James ; Pumphrey, Michael ; Liu, Sixin ; Kong, Xiuying ; Jia, Jizeng ; Gut, Marta ; Brunel, Dominique ; Anderson, James A ; Gill, Bikram S ; Appels, Rudi ; Keller, Beat ; Feuillet, Catherine
Publisher:United States: American Society of Plant Biologists
Journal title:The Plant cell, 2010-06, Vol.22 (6), p.1686-1701
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All families of transposable elements were active in the recent wheat genome evolution and polyploidy had no impact on their activity
Author / Creator:Papon, Nathan ; Lasserre-Zuber, Pauline ; Rimbert, Hélène ; De Oliveira, Romain ; Paux, Etienne ; Choulet, Frédéric
Publisher:United States: John Wiley & Sons, Inc
Journal title:The plant genome, 2023-09, Vol.16 (3), p.e20347-e20347
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Genomes of Aegilops umbellulata provide new insights into unique structural variations and genetic diversity in the U‐genome for wheat improvement
Author / Creator:Singh, Jatinder ; Gudi, Santosh ; Maughan, Peter J. ; Liu, Zhaohui ; Kolmer, James ; Wang, Meinan ; Chen, Xianming ; Rouse, Matthew N. ; Lasserre‐Zuber, Pauline ; Rimbert, Héléne ; Sehgal, Sunish ; Fiedler, Jason D. ; Choulet, Frédéric ; Acevedo, Maricelis ; Gupta, Rajeev ; Gill, Upinder
Publisher:England: John Wiley & Sons, Inc
Journal title:Plant biotechnology journal, 2024-12, Vol.22 (12), p.3505-3519
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Major Gene for Field Stem Rust Resistance Co-Locates with Resistance Gene Sr12 in 'Thatcher' Wheat
Author / Creator:Hiebert, Colin W ; Kolmer, James A ; McCartney, Curt A ; Briggs, Jordan ; Fetch, Tom ; Bariana, Harbans ; Choulet, Frederic ; Rouse, Matthew N ; Spielmeyer, Wolfgang
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-06, Vol.11 (6), p.e0157029-e0157029
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Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome
Author / Creator:Keeble-Gagnère, Gabriel ; Rigault, Philippe ; Tibbits, Josquin ; Pasam, Raj ; Hayden, Matthew ; Forrest, Kerrie ; Frenkel, Zeev ; Korol, Abraham ; Huang, B Emma ; Cavanagh, Colin ; Taylor, Jen ; Abrouk, Michael ; Sharpe, Andrew ; Konkin, David ; Sourdille, Pierre ; Darrier, Benoît ; Choulet, Frédéric ; Bernard, Aurélien ; Rochfort, Simone ; Dimech, Adam ; Watson-Haigh, Nathan ; Baumann, Ute ; Eckermann, Paul ; Fleury, Delphine ; Juhasz, Angela ; Boisvert, Sébastien ; Nolin, Marc-Alexandre ; Doležel, Jaroslav ; Šimková, Hana ; Toegelová, Helena ; Šafář, Jan ; Luo, Ming-Cheng ; Câmara, Francisco ; Pfeifer, Matthias ; Isdale, Don ; Nyström-Persson, Johan ; Iwgsc ; Koo, Dal-Hoe ; Tinning, Matthew ; Cui, Dangqun ; Ru, Zhengang ; Appels, Rudi
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-08, Vol.19 (1), p.112-112, Article 112
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Transcriptome and allele specificity associated with a 3BL locus for Fusarium crown rot resistance in bread wheat
Author / Creator:Ma, Jian ; Stiller, Jiri ; Zhao, Qiang ; Feng, Qi ; Cavanagh, Colin ; Wang, Penghao ; Gardiner, Donald ; Choulet, Frédéric ; Feuillet, Catherine ; Zheng, You-Liang ; Wei, Yuming ; Yan, Guijun ; Han, Bin ; Manners, John M ; Liu, Chunji
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-11, Vol.9 (11), p.e113309-e113309
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New insights into homoeologous copy number variations in the hexaploid wheat genome
Author / Creator:Juery, Caroline ; Concia, Lorenzo ; De Oliveira, Romain ; Papon, Nathan ; Ramírez‐González, Ricardo ; Benhamed, Moussa ; Uauy, Cristobal ; Choulet, Frédéric ; Paux, Etienne
Publisher:United States: John Wiley & Sons, Inc
Journal title:The plant genome, 2021-03, Vol.14 (1), p.e20069-n/a
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Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives
Author / Creator:Wicker, Thomas ; Mayer, Klaus F.X. ; Gundlach, Heidrun ; Martis, Mihaela ; Steuemagel, Burkhard ; Scholz, Uwe ; Šimková, Hana ; Kubaláková, Marie ; Choulet, Frédéric ; Taudien, Stefan ; Platzer, Matthias ; Feuillet, Catherine ; Fahima, Tzion ; Budak, Hikmet ; Doležel, Jaroslav ; Keller, Beat ; Stein, Nils
Publisher:England: American Society of Plant Biologists
Journal title:The Plant cell, 2011-05, Vol.23 (5), p.1706-1718
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Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome
Author / Creator:Ilc, Tina ; Arista, Gautier ; Tavares, Raquel ; Navrot, Nicolas ; Duchêne, Eric ; Velt, Amandine ; Choulet, Frédéric ; Paux, Etienne ; Fischer, Marc ; Nelson, David R ; Hugueney, Philippe ; Werck-Reichhart, Danièle ; Rustenholz, Camille
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-06, Vol.13 (6), p.e0199902-e0199902
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A second‐generation capture panel for cost‐effective sequencing of genome regulatory regions in wheat and relatives
Author / Creator:Zhang, Junli ; Debernardi, Juan M. ; Burguener, Germán F. ; Choulet, Frédéric ; Paux, Etienne ; O'Connor, Lauren ; Enk, Jacob ; Dubcovsky, Jorge
Publisher:United States: John Wiley & Sons, Inc
Journal title:The plant genome, 2023-03, Vol.16 (1), p.e20296-n/a
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Location and Identification on Chromosome 3B of Bread Wheat of Genes Affecting Chiasma Number
Author / Creator:Darrier, Benoit ; Colas, Isabelle ; Rimbert, Hélène ; Choulet, Frédéric ; Bazile, Jeanne ; Sortais, Aurélien ; Jenczewski, Eric ; Sourdille, Pierre
Publisher:Switzerland: MDPI AG
Journal title:Plants (Basel), 2022-08, Vol.11 (17), p.2281
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Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population
Author / Creator:David, Jacques ; Holtz, Yan ; Ranwez, Vincent ; Santoni, Sylvain ; Sarah, Gautier ; Ardisson, Morgane ; Poux, Gérard ; Choulet, Fréderic ; Genthon, Clémence ; Roumet, Pierre ; Tavaud-Pirra, Muriel
Publisher:Dordrecht: Springer-Verlag
Journal title:Molecular breeding, 2014-12, Vol.34 (4), p.1531-1548
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Fine mapping of a large-effect QTL conferring Fusarium crown rot resistance on the long arm of chromosome 3B in hexaploid wheat
Author / Creator:Zheng, Zhi ; Ma, Jian ; Stiller, Jiri ; Zhao, Qiang ; Feng, Qi ; Choulet, Frédéric ; Feuillet, Catherine ; Zheng, You-Liang ; Wei, Yuming ; Han, Bin ; Yan, Guijun ; Manners, John M ; Liu, Chunji
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2015-10, Vol.16 (1), p.850-850, Article 850
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Impact of transposable elements on genome structure and evolution in bread wheat

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Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

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High throughput SNP discovery and genotyping in hexaploid wheat

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Structural and functional partitioning of bread wheat chromosome 3B

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Physical Map of the 1-Gigabase Bread Wheat Chromosome 3B

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Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome

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High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism

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Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces

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All families of transposable elements were active in the recent wheat genome evolution and polyploidy had no impact on their activity

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Genomes of Aegilops umbellulata provide new insights into unique structural variations and genetic diversity in the U‐genome for wheat improvement

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Major Gene for Field Stem Rust Resistance Co-Locates with Resistance Gene Sr12 in 'Thatcher' Wheat

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Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome

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Transcriptome and allele specificity associated with a 3BL locus for Fusarium crown rot resistance in bread wheat

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New insights into homoeologous copy number variations in the hexaploid wheat genome

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Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives

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Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome

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A second‐generation capture panel for cost‐effective sequencing of genome regulatory regions in wheat and relatives

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Location and Identification on Chromosome 3B of Bread Wheat of Genes Affecting Chiasma Number

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Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population

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Fine mapping of a large-effect QTL conferring Fusarium crown rot resistance on the long arm of chromosome 3B in hexaploid wheat

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