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897 results for Contig+Mapping

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ArticlesPeer ReviewedFull Text
High-quality genome (re)assembly using chromosomal contact data
Author / Creator:Marie-Nelly, Hervé ; Marbouty, Martial ; Cournac, Axel ; Flot, Jean-François ; Liti, Gianni ; Parodi, Dante Poggi ; Syan, Sylvie ; Guillén, Nancy ; Margeot, Antoine ; Zimmer, Christophe ; Koszul, Romain
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2014-12, Vol.5 (1), p.5695-5695, Article 5695
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Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
Author / Creator:McIntyre, Alexa B. R. ; Ounit, Rachid ; Afshinnekoo, Ebrahim ; Prill, Robert J. ; Hénaff, Elizabeth ; Alexander, Noah ; Minot, Samuel S. ; Danko, David ; Foox, Jonathan ; Ahsanuddin, Sofia ; Tighe, Scott ; Hasan, Nur A. ; Subramanian, Poorani ; Moffat, Kelly ; Levy, Shawn ; Lonardi, Stefano ; Greenfield, Nick ; Colwell, Rita R. ; Rosen, Gail L. ; Mason, Christopher E.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2017-09, Vol.18 (1), p.182-182, Article 182
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Reducing assembly complexity of microbial genomes with single-molecule sequencing
Author / Creator:Koren, Sergey ; Harhay, Gregory P ; Smith, Timothy PL ; Bono, James L ; Harhay, Dayna M ; Mcvey, Scott D ; Radune, Diana ; Bergman, Nicholas H ; Phillippy, Adam M
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2013-09, Vol.14 (9), p.R101-R101, Article R101
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De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Author / Creator:Dudchenko, Olga ; Batra, Sanjit S. ; Omer, Arina D. ; Nyquist, Sarah K. ; Hoeger, Marie ; Durand, Neva C. ; Shamim, Muhammad S. ; Machol, Ido ; Lander, Eric S. ; Aiden, Aviva Presser ; Aiden, Erez Lieberman
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2017-04, Vol.356 (6333), p.92-95
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Chromosome-Scale Assembly of the Bread Wheat Genome Reveals Thousands of Additional Gene Copies
Author / Creator:Alonge, Michael ; Shumate, Alaina ; Puiu, Daniela ; Zimin, Aleksey V ; Salzberg, Steven L
Publisher:United States: Oxford University Press
Journal title:Genetics (Austin), 2020-10, Vol.216 (2), p.599-608
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Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing
Author / Creator:Chen, Zhao ; Erickson, David L. ; Meng, Jianghong
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2020-09, Vol.21 (1), p.631-631, Article 631
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MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
Author / Creator:Treangen, Todd J ; Koren, Sergey ; Sommer, Daniel D ; Liu, Bo ; Astrovskaya, Irina ; Ondov, Brian ; Darling, Aaron E ; Phillippy, Adam M ; Pop, Mihai
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2013-01, Vol.14 (1), p.R2-R2, Article R2
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Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes
Author / Creator:Kogawa, Masato ; Hosokawa, Masahito ; Nishikawa, Yohei ; Mori, Kazuki ; Takeyama, Haruko
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2018-02, Vol.8 (1), p.2059-11, Article 2059
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Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Author / Creator:Roach, Michael J. ; Schmidt, Simon A. ; Borneman, Anthony R.
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2018-11, Vol.19 (1), p.460-460, Article 460
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A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing
Author / Creator:Kingan, Sarah B. ; Heaton, Haynes ; Cudini, Juliana ; Lambert, Christine C. ; Baybayan, Primo ; Galvin, Brendan D. ; Durbin, Richard ; Korlach, Jonas ; Lawniczak, Mara K. N.
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2019-01, Vol.10 (1), p.62
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Circlator: automated circularization of genome assemblies using long sequencing reads
Author / Creator:Hunt, Martin ; Silva, Nishadi De ; Otto, Thomas D. ; Parkhill, Julian ; Keane, Jacqueline A. ; Harris, Simon R.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2015-12, Vol.16 (1), p.294-294, Article 294
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GUNC: detection of chimerism and contamination in prokaryotic genomes
Author / Creator:Orakov, Askarbek ; Fullam, Anthony ; Coelho, Luis Pedro ; Khedkar, Supriya ; Szklarczyk, Damian ; Mende, Daniel R. ; Schmidt, Thomas S. B. ; Bork, Peer
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2021-06, Vol.22 (1), p.178-178, Article 178
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Improved maize reference genome with single-molecule technologies
Author / Creator:Jiao, Yinping ; Peluso, Paul ; Shi, Jinghua ; Liang, Tiffany ; Stitzer, Michelle C. ; Wang, Bo ; Campbell, Michael S. ; Stein, Joshua C. ; Wei, Xuehong ; Chin, Chen-Shan ; Guill, Katherine ; Regulski, Michael ; Kumari, Sunita ; Olson, Andrew ; Gent, Jonathan ; Schneider, Kevin L. ; Wolfgruber, Thomas K. ; May, Michael R. ; Springer, Nathan M. ; Antoniou, Eric ; McCombie, W. Richard ; Presting, Gernot G. ; McMullen, Michael ; Ross-Ibarra, Jeffrey ; Dawe, R. Kelly ; Hastie, Alex ; Rank, David R. ; Ware, Doreen
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2017-06, Vol.546 (7659), p.524-527
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ArticlesPeer ReviewedFull Text
Scaffolding of long read assemblies using long range contact information
Author / Creator:Ghurye, Jay ; Pop, Mihai ; Koren, Sergey ; Bickhart, Derek ; Chin, Chen-Shan
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2017-07, Vol.18 (1), p.527-527, Article 527
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A human gut bacterial genome and culture collection for improved metagenomic analyses
Author / Creator:Forster, Samuel C. ; Kumar, Nitin ; Anonye, Blessing O. ; Almeida, Alexandre ; Viciani, Elisa ; Stares, Mark D. ; Dunn, Matthew ; Mkandawire, Tapoka T. ; Zhu, Ana ; Shao, Yan ; Pike, Lindsay J. ; Louie, Thomas ; Browne, Hilary P. ; Mitchell, Alex L. ; Neville, B. Anne ; Finn, Robert D. ; Lawley, Trevor D.
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2019-02, Vol.37 (2), p.186-192
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Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS
Author / Creator:Deneke, Carlus ; Brendebach, Holger ; Uelze, Laura ; Borowiak, Maria ; Malorny, Burkhard ; Tausch, Simon H.
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2021-04, Vol.12 (5), p.644
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A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes
Author / Creator:Li, Guangwei ; Wang, Lijian ; Yang, Jianping ; He, Hang ; Jin, Huaibing ; Li, Xuming ; Ren, Tianheng ; Ren, Zhenglong ; Li, Feng ; Han, Xue ; Zhao, Xiaoge ; Dong, Lingli ; Li, Yiwen ; Song, Zhongping ; Yan, Zehong ; Zheng, Nannan ; Shi, Cuilan ; Wang, Zhaohui ; Yang, Shuling ; Xiong, Zijun ; Zhang, Menglan ; Sun, Guanghua ; Zheng, Xu ; Gou, Mingyue ; Ji, Changmian ; Du, Junkai ; Zheng, Hongkun ; Doležel, Jaroslav ; Deng, Xing Wang ; Stein, Nils ; Yang, Qinghua ; Zhang, Kunpu ; Wang, Daowen
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2021-04, Vol.53 (4), p.574-584
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A Y-linked anti-Müllerian hormone type-II receptor is the sex-determining gene in ayu, Plecoglossus altivelis
Author / Creator:Nakamoto, Masatoshi ; Uchino, Tsubasa ; Koshimizu, Eriko ; Kuchiishi, Yudai ; Sekiguchi, Ryota ; Wang, Liu ; Sudo, Ryusuke ; Endo, Masato ; Guiguen, Yann ; Schartl, Manfred ; Postlethwait, John H. ; Sakamoto, Takashi
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2021-08, Vol.17 (8), p.e1009705-e1009705
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Long-read sequence assembly of the gorilla genome
Author / Creator:Gordon, David ; Huddleston, John ; Chaisson, Mark J. P. ; Hill, Christopher M. ; Kronenberg, Zev N. ; Munson, Katherine M. ; Malig, Maika ; Raja, Archana ; Fiddes, Ian ; Hillier, LaDeana W. ; Dunn, Christopher ; Baker, Carl ; Armstrong, Joel ; Diekhans, Mark ; Paten, Benedict ; Shendure, Jay ; Wilson, Richard K. ; Haussler, David ; Chin, Chen-Shan ; Eichler, Evan E.
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2016-04, Vol.352 (6281), p.52-52
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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Author / Creator:Burton, Joshua N ; Adey, Andrew ; Patwardhan, Rupali P ; Qiu, Ruolan ; Kitzman, Jacob O ; Shendure, Jay
Publisher:London: Nature Publishing Group UK
Journal title:Nature biotechnology, 2013-12, Vol.31 (12), p.1119-1125
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Showing 1 to 20 of 897 results

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High-quality genome (re)assembly using chromosomal contact data

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Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

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Reducing assembly complexity of microbial genomes with single-molecule sequencing

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De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

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Chromosome-Scale Assembly of the Bread Wheat Genome Reveals Thousands of Additional Gene Copies

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Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing

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MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

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Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes

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Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

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A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing

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Circlator: automated circularization of genome assemblies using long sequencing reads

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GUNC: detection of chimerism and contamination in prokaryotic genomes

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Improved maize reference genome with single-molecule technologies

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Scaffolding of long read assemblies using long range contact information

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A human gut bacterial genome and culture collection for improved metagenomic analyses

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Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

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A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes

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A Y-linked anti-Müllerian hormone type-II receptor is the sex-determining gene in ayu, Plecoglossus altivelis

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Long-read sequence assembly of the gorilla genome

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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

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