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ArticlesPeer ReviewedFull Text
METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs
Author / Creator:Zhang, Zhenmiao ; Zhang, Lu
Publisher:London: BioMed Central Ltd
Journal title:BMC bioinformatics, 2021-07, Vol.22 (S10), p.1-378, Article 378
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ArticlesPeer ReviewedFull Text
AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides
Author / Creator:Darabi, Amin ; Sobhani, Sayeh ; Aghdam, Rosa ; Eslahchi, Changiz
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2024-07, Vol.25 (1), p.241-17, Article 241
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ArticlesPeer ReviewedFull Text
Improving contig binning of metagenomic data using $$ {d}_2^S $$ oligonucleotide frequency dissimilarity
Author / Creator:Wang, Ying ; Wang, Kun ; Lu, Yang Young ; Sun, Fengzhu
Journal title:BMC bioinformatics, 2017-09, Vol.18 (1), Article 425
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ArticlesPeer ReviewedFull Text
Improving contig binning of metagenomic data using d2S\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage...
Author / Creator:Wang, Ying ; Wang, Kun ; Lu, Yang Young ; Sun, Fengzhu
Publisher:BioMed Central Ltd
Journal title:BMC bioinformatics, 2017-09, Vol.18 (1)
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ArticlesPeer ReviewedFull Text
Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity
Author / Creator:Wang, Ying ; Wang, Kun ; Lu, Yang Young ; Sun, Fengzhu
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2017-09, Vol.18 (1), p.425-425
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ArticlesPeer ReviewedFull Text
Improving contig binning of metagenomic data using d 2 S $$ {d}_2^S $$ oligonucleotide frequency dissimilarity
Author / Creator:Ying Wang ; Kun Wang ; Yang Young Lu ; Fengzhu Sun
Publisher:BMC
Journal title:BMC bioinformatics, 2017-09, Vol.18 (1), p.1-14
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ArticlesPeer ReviewedFull Text
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
Author / Creator:Du, Yuxuan ; Sun, Fengzhu
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2022-02, Vol.23 (1), p.63-63, Article 63
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ArticlesPeer ReviewedFull Text
Improving contig binning of metagenomic data using \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{ma...
Author / Creator:Wang, Ying ; Wang, Kun ; Lu, Yang Young ; Sun, Fengzhu
Publisher:London: BioMed Central
Journal title:BMC bioinformatics, 2017-09, Vol.18
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ArticlesPeer ReviewedFull Text
A binning tool to reconstruct viral haplotypes from assembled contigs
Author / Creator:Chen, Jiao ; Shang, Jiayu ; Wang, Jianrong ; Sun, Yanni
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-11, Vol.20 (1), p.544-13, Article 544
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ArticlesFull Text
METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs
Author / Creator:Zhang, Zhenmiao ; Zhang, Lu
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-10
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Newsletter articlesFull Text
METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs
Publisher:NewsRX LLC
Journal title:Life Science Weekly, 2020, p.2256
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Newsletter articlesFull Text
Studies from Hong Kong Baptist University Have Provided New Data on Bioinformatics (METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graph...
Publisher:NewsRX LLC
Journal title:Biotech Week, 2021, p.534
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ArticlesFull Text
Extraction of near-complete genomes from metagenomic samples: a new service in PATRIC
Author / Creator:Parrello, Bruce ; Butler, Rory ; Chlenski, Philippe ; Pusch, Gordon D ; Overbeek, Ross
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-12
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ArticlesPeer ReviewedFull Text
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
Author / Creator:McLean, Jeffrey S. ; Lombardo, Mary-Jane ; Badger, Jonathan H. ; Edlund, Anna ; Novotny, Mark ; Yee-Greenbaum, Joyclyn ; Vyahhi, Nikolay ; Hall, Adam P. ; Yang, Youngik ; Dupont, Christopher L. ; Ziegler, Michael G. ; Chitsaz, Hamidreza ; Allen, Andrew E. ; Yooseph, Shibu ; Tesler, Glenn ; Pevzner, Pavel A. ; Friedman, Robert M. ; Nealson, Kenneth H. ; Venter, J. Craig ; Lasken, Roger S.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-06, Vol.110 (26), p.E2390-E2399
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ArticlesPeer ReviewedFull Text
MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage
Author / Creator:Qian, Jia ; Comin, Matteo
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-11, Vol.20 (S9), p.367-367, Article 367
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ArticlesPeer ReviewedFull Text
Effective binning of metagenomic contigs using contrastive multi-view representation learning
Author / Creator:Wang, Ziye ; You, Ronghui ; Han, Haitao ; Liu, Wei ; Sun, Fengzhu ; Zhu, Shanfeng
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-01, Vol.15 (1), p.585-585, Article 585
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ArticlesPeer ReviewedFull Text
Metagenome-assembled genomes provide insight into the microbial taxonomy and ecology of the Buhera soda pans, Zimbabwe
Author / Creator:Mangoma, Ngonidzashe ; Zhou, Nerve ; Ncube, Thembekile
Publisher:United States: Public Library of Science
Journal title:PloS one, 2024-12, Vol.19 (12), p.e0299620
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ArticlesPeer ReviewedFull Text
Binning long reads in metagenomics datasets using composition and coverage information
Author / Creator:Wickramarachchi, Anuradha ; Lin, Yu
Publisher:London: BioMed Central Ltd
Journal title:Algorithms for molecular biology, 2022-07, Vol.17 (1), p.1-14, Article 14
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ArticlesPeer ReviewedFull Text
Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics
Author / Creator:Arikawa, Koji ; Ide, Keigo ; Kogawa, Masato ; Saeki, Tatsuya ; Yoda, Takuya ; Endoh, Taruho ; Matsuhashi, Ayumi ; Takeyama, Haruko ; Hosokawa, Masahito
Publisher:London: BioMed Central
Journal title:Microbiome, 2021-10, Vol.9 (1), p.1-202, Article 202
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ArticlesPeer ReviewedFull Text
ICoVeR – an interactive visualization tool for verification and refinement of metagenomic bins
Author / Creator:Broeksema, Bertjan ; Calusinska, Magdalena ; McGee, Fintan ; Winter, Klaas ; Bongiovanni, Francesco ; Goux, Xavier ; Wilmes, Paul ; Delfosse, Philippe ; Ghoniem, Mohammad
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2017-05, Vol.18 (1), p.233-233, Article 233
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METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs

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AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides

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Improving contig binning of metagenomic data using $$ {d}_2^S $$ oligonucleotide frequency dissimilarity

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Improving contig binning of metagenomic data using d2S\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage...

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Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity

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Improving contig binning of metagenomic data using d 2 S $$ {d}_2^S $$ oligonucleotide frequency dissimilarity

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HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps

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Improving contig binning of metagenomic data using \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{ma...

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A binning tool to reconstruct viral haplotypes from assembled contigs

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METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs

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METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs

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Studies from Hong Kong Baptist University Have Provided New Data on Bioinformatics (METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graph...

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Extraction of near-complete genomes from metagenomic samples: a new service in PATRIC

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Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

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MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage

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Effective binning of metagenomic contigs using contrastive multi-view representation learning

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Metagenome-assembled genomes provide insight into the microbial taxonomy and ecology of the Buhera soda pans, Zimbabwe

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Binning long reads in metagenomics datasets using composition and coverage information

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Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

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ICoVeR – an interactive visualization tool for verification and refinement of metagenomic bins

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