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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
Author / Creator:Sancho, Rubén ; Cantalapiedra, Carlos P. ; López‐Alvarez, Diana ; Gordon, Sean P. ; Vogel, John P. ; Catalán, Pilar ; Contreras‐Moreira, Bruno
Publisher:England: New Phytologist Trust
Journal title:The New phytologist, 2018-06, Vol.218 (4), p.1631-1644
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K‐mer counting and curated libraries drive efficient annotation of repeats in plant genomes
Author / Creator:Contreras‐Moreira, Bruno ; Filippi, Carla V ; Naamati, Guy ; García Girón, Carlos ; Allen, James E ; Flicek, Paul
Publisher:United States: John Wiley & Sons, Inc
Journal title:The plant genome, 2021-11, Vol.14 (3), p.e20143-n/a
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Genetic Diversity, Population Structure and Linkage Disequilibrium Assessment among International Sunflower Breeding Collections
Author / Creator:Filippi, Carla V. ; Merino, Gabriela A. ; Montecchia, Juan F. ; Aguirre, Natalia C. ; Rivarola, Máximo ; Naamati, Guy ; Fass, Mónica I. ; Álvarez, Daniel ; Di Rienzo, Julio ; Heinz, Ruth A. ; Contreras Moreira, Bruno ; Lia, Verónica V. ; Paniego, Norma B.
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2020-03, Vol.11 (3), p.283
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A Cluster of Nucleotide‐Binding Site–Leucine‐Rich Repeat Genes Resides in a Barley Powdery Mildew Resistance Quantitative Trait Loci on 7HL
Author / Creator:Cantalapiedra, Carlos P. ; Contreras‐Moreira, Bruno ; Silvar, Cristina ; Perovic, Dragan ; Ordon, Frank ; Gracia, María Pilar ; Igartua, Ernesto ; Casas, Ana M.
Publisher:United States: Crop Science Society of America
Journal title:The plant genome, 2016-07, Vol.9 (2), p.1-14
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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
Author / Creator:Gordon, Sean P. ; Contreras-Moreira, Bruno ; Woods, Daniel P. ; Des Marais, David L. ; Burgess, Diane ; Shu, Shengqiang ; Stritt, Christoph ; Roulin, Anne C. ; Schackwitz, Wendy ; Tyler, Ludmila ; Martin, Joel ; Lipzen, Anna ; Dochy, Niklas ; Phillips, Jeremy ; Barry, Kerrie ; Geuten, Koen ; Budak, Hikmet ; Juenger, Thomas E. ; Amasino, Richard ; Caicedo, Ana L. ; Goodstein, David ; Davidson, Patrick ; Mur, Luis A. J. ; Figueroa, Melania ; Freeling, Michael ; Catalan, Pilar ; Vogel, John P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2017-12, Vol.8 (1), p.2184-13, Article 2184
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Unraveling the genome of Bacillus velezensis MEP218, a strain producing fengycin homologs with broad antibacterial activity: comprehensive comparative genome analysis
Author / Creator:Medeot, Daniela ; Sannazzaro, Analía ; Estrella, María Julia ; Torres Tejerizo, Gonzalo ; Contreras-Moreira, Bruno ; Pistorio, Mariano ; Jofré, Edgardo
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-12, Vol.13 (1), p.22168-22168, Article 22168
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GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation
Author / Creator:Contreras-Moreira, Bruno ; Saraf, Shradha ; Naamati, Guy ; Casas, Ana M. ; Amberkar, Sandeep S. ; Flicek, Paul ; Jones, Andrew R. ; Dyer, Sarah
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2023-10, Vol.24 (1), p.223-223, Article 223
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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
Author / Creator:Gordon, Sean P. ; Contreras-Moreira, Bruno ; Levy, Joshua J. ; Djamei, Armin ; Czedik-Eysenberg, Angelika ; Tartaglio, Virginia S. ; Session, Adam ; Martin, Joel ; Cartwright, Amy ; Katz, Andrew ; Singan, Vasanth R. ; Goltsman, Eugene ; Barry, Kerrie ; Dinh-Thi, Vinh Ha ; Chalhoub, Boulos ; Diaz-Perez, Antonio ; Sancho, Ruben ; Lusinska, Joanna ; Wolny, Elzbieta ; Nibau, Candida ; Doonan, John H. ; Mur, Luis A. J. ; Plott, Chris ; Jenkins, Jerry ; Hazen, Samuel P. ; Lee, Scott J. ; Shu, Shengqiang ; Goodstein, David ; Rokhsar, Daniel ; Schmutz, Jeremy ; Hasterok, Robert ; Catalan, Pilar ; Vogel, John P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-07, Vol.11 (1), p.3670-3670, Article 3670
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BARLEYMAP: physical and genetic mapping of nucleotide sequences and annotation of surrounding loci in barley
Author / Creator:Cantalapiedra, Carlos P ; Boudiar, Ridha ; Casas, Ana M ; Igartua, Ernesto ; Contreras-Moreira, Bruno
Publisher:Dordrecht: Springer-Verlag
Journal title:Molecular breeding, 2015, Vol.35 (1), Article 13
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A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat
Author / Creator:Adamski, Nikolai M ; Borrill, Philippa ; Brinton, Jemima ; Harrington, Sophie A ; Marchal, Clémence ; Bentley, Alison R ; Bovill, William D ; Cattivelli, Luigi ; Cockram, James ; Contreras-Moreira, Bruno ; Ford, Brett ; Ghosh, Sreya ; Harwood, Wendy ; Hassani-Pak, Keywan ; Hayta, Sadiye ; Hickey, Lee T ; Kanyuka, Kostya ; King, Julie ; Maccaferrri, Marco ; Naamati, Guy ; Pozniak, Curtis J ; Ramirez-Gonzalez, Ricardo H ; Sansaloni, Carolina ; Trevaskis, Ben ; Wingen, Luzie U ; Wulff, Brande BH ; Uauy, Cristobal
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2020-03, Vol.9
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Evolutionary Trajectories of Methionine Metabolism in Mycobacterium and Its Application to Engineer a Vitamin B12 Whole-Cell Ribosensor
Author / Creator:Campos-Pardos, Elena ; Sanz-Asensio, Laura ; Pérez-Jiménez, Sandra ; Yruela, Inmaculada ; Contreras-Moreira, Bruno ; Toledo-Arana, Alejandro ; Gonzalo-Asensio, Jesús
Publisher:United States: John Wiley and Sons Inc
Journal title:Microbial biotechnology, 2025-06, Vol.18 (6), p.e70176
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Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast
Author / Creator:Kelemen, Zsolt ; Sebastian, Alvaro ; Xu, Wenjia ; Grain, Damaris ; Salsac, Fabien ; Avon, Alexandra ; Berger, Nathalie ; Tran, Joseph ; Dubreucq, Bertrand ; Lurin, Claire ; Lepiniec, Loïc ; Contreras-Moreira, Bruno ; Dubos, Christian
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-10, Vol.10 (10), p.e0141044-e0141044
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Protein disorder in plants: a view from the chloroplast
Author / Creator:Yruela, Inmaculada ; Contreras-Moreira, Bruno
Publisher:England: BioMed Central Ltd
Journal title:BMC plant biology, 2012-09, Vol.12 (1), p.165-165
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Diversity of gene expression responses to light quality in barley
Author / Creator:Rodríguez del Río, Álvaro ; Monteagudo, Arantxa ; Contreras-Moreira, Bruno ; Kiss, Tibor ; Mayer, Marianna ; Karsai, Ildikó ; Igartua, Ernesto ; Casas, Ana M.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-10, Vol.13 (1), p.17143-17143, Article 17143
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Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli
Author / Creator:Mendoza-Vargas, Alfredo ; Olvera, Leticia ; Olvera, Maricela ; Grande, Ricardo ; Vega-Alvarado, Leticia ; Taboada, Blanca ; Jimenez-Jacinto, Verónica ; Salgado, Heladia ; Juárez, Katy ; Contreras-Moreira, Bruno ; Huerta, Araceli M. ; Collado-Vides, Julio ; Morett, Enrique
Publisher:United States: Public Library of Science
Journal title:PloS one, 2009-10, Vol.4 (10), p.e7526-e7526
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Fine-tuning of the flowering time control in winter barley: the importance of HvOS2 and HvVRN2 in non-inductive conditions
Author / Creator:Monteagudo, Arantxa ; Igartua, Ernesto ; Contreras-Moreira, Bruno ; Gracia, M. Pilar ; Ramos, Javier ; Karsai, Ildikó ; Casas, Ana M.
Publisher:England: BioMed Central Ltd
Journal title:BMC plant biology, 2019-03, Vol.19 (1), p.113-113, Article 113
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In Vivo Chromatin Targets of the Transcription Factor Yin Yang 2 in Trophoblast Stem Cells
Author / Creator:Pérez-Palacios, Raquel ; Macías-Redondo, Sofía ; Climent, María ; Contreras-Moreira, Bruno ; Muniesa, Pedro ; Schoorlemmer, Jon
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-05, Vol.11 (5), p.e0154268-e0154268
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Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model Brachypodium Grasses
Author / Creator:Decena, Maria Angeles ; Gálvez-Rojas, Sergio ; Agostini, Federico ; Sancho, Ruben ; Contreras-Moreira, Bruno ; Des Marais, David L. ; Hernandez, Pilar ; Catalán, Pilar
Publisher:Switzerland: MDPI AG
Journal title:Plants (Basel), 2021-12, Vol.10 (12), p.2664
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Resequencing theVrs1 gene in Spanish barley landraces revealed reversion of six-rowed to two-rowed spike
Author / Creator:Casas, Ana M. ; Contreras-Moreira, Bruno ; Cantalapiedra, Carlos P. ; Sakuma, Shun ; Gracia, María Pilar ; Moralejo, Marian ; Molina-Cano, José Luis ; Komatsuda, Takao ; Igartua, Ernesto
Publisher:Dordrecht: Springer Netherlands
Journal title:Molecular breeding, 2018-05, Vol.38 (5), p.1-12, Article 51
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Evolutionary divergence of chloroplast FAD synthetase proteins
Author / Creator:Yruela, Inmaculada ; Arilla-Luna, Sonia ; Medina, Milagros ; Contreras-Moreira, Bruno
Publisher:England: BioMed Central Ltd
Journal title:BMC evolutionary biology, 2010-10, Vol.10 (1), p.311-311
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Showing 1 to 20 of 47 results

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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes

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K‐mer counting and curated libraries drive efficient annotation of repeats in plant genomes

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Genetic Diversity, Population Structure and Linkage Disequilibrium Assessment among International Sunflower Breeding Collections

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A Cluster of Nucleotide‐Binding Site–Leucine‐Rich Repeat Genes Resides in a Barley Powdery Mildew Resistance Quantitative Trait Loci on 7HL

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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

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Unraveling the genome of Bacillus velezensis MEP218, a strain producing fengycin homologs with broad antibacterial activity: comprehensive comparative genome analysis

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GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation

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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

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BARLEYMAP: physical and genetic mapping of nucleotide sequences and annotation of surrounding loci in barley

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A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat

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Evolutionary Trajectories of Methionine Metabolism in Mycobacterium and Its Application to Engineer a Vitamin B12 Whole-Cell Ribosensor

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Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast

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Protein disorder in plants: a view from the chloroplast

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Diversity of gene expression responses to light quality in barley

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Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

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Fine-tuning of the flowering time control in winter barley: the importance of HvOS2 and HvVRN2 in non-inductive conditions

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In Vivo Chromatin Targets of the Transcription Factor Yin Yang 2 in Trophoblast Stem Cells

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Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model Brachypodium Grasses

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Resequencing theVrs1 gene in Spanish barley landraces revealed reversion of six-rowed to two-rowed spike

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Evolutionary divergence of chloroplast FAD synthetase proteins

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